fliZ:Quickview: Difference between revisions

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{{Tab On|Quickview|fliZ}}{{Tab|Gene|fliZ}}{{Tab|Gene Product(s)|fliZ}}{{Tab|Expression|fliZ}}{{Tab|Evolution|fliZ}}{{Tab|On One Page|fliZ}}{{TabsBottom}}
{{Tab On|Quickview|fliZ}}{{Tab|Gene|fliZ}}{{Tab|Gene Product(s)|fliZ}}{{Tab|Expression|fliZ}}{{Tab|Evolution|fliZ}}{{Tab|On One Page|fliZ}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[fliZ:Gene|''fliZ]]'' (synonyms: ''ECK1920, b1921, JW1906, yedH'')<ref name='LIB:Riley_2006'/>
''fliZ''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[fliZ:Gene_Product(s)|FliZ product]]<ref name='LIB:Riley_2006'/>: predicted regulator of FliA activity<ref name='LIB:Riley_2006'/>, B1921<ref name='LIB:EcoCyc10.6'/>, YedH<ref name='LIB:EcoCyc10.6'/>, FliZ<ref name='LIB:EcoCyc10.6'/>
''ECK1920, b1921, JW1906, yedH''<ref name='LIB:Riley_2006'/>, yedH''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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possible cell-density responsive regulator of sigmaF<ref name='LIB:EcoCyc10.6'/>predicted regulator of FliA activity<ref name='LIB:EcoCyc11.1'/>
possible cell-density responsive regulator of sigmaF<ref name='LIB:EcoCyc10.6'/>; predicted regulator of FliA activity<ref name='LIB:EcoCyc11.1'/>
 


RpoS antagonist, transiently in post-exponential phase; timing factor allowing motility to continue for a while during starvation; not required for normal motility<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted regulator of FliA activity<ref name='LIB:Riley_2006'/>, B1921<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YedH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FliZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1920, JW1906, yedH, b1921''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:fliAZY|fliAZY]]<ref name='LIB:EcoCyc10.6'/>, fliA  
transcription unit(s): [[:Category:Txn_unit:fliAZY|fliAZY]]<ref name='LIB:EcoCyc10.6'/>, fliA  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=fliZ&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11356]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001325&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=fliZ&loc=MG1655%3A1999048..1998497,W3110%3A2003161..2002610,DH10B%3A2090056..2089505,BW2952%3A1890980..1891531]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1890980&end=1891531&gene=fliZ&aa=mphfnfdyqeflmmvqhlkrrplsrylkdfkhsqthcahcrklldritlvrdgkivnkieisrldtlldengwqteqkswaalcrfcgdlhcktqsdffdiigfkqflfeqtemspgtvreyvvrlrrlgnhlheqnisldqlqdgfldeilapwlpttstnnyrialrkyqhyqrqtctrlvqkssslpssdiy]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=fliZ+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=fliZ]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
FliZ antagonizes Crl activation of a subset of RpoS-dependent promoters, without changing RpoS levels, and thus resembles an anti-sigma factor at Crl-stimulated RpoS promoters (Pesavento, 2008). FliZ may also regulate FliA (sigma 28).<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 21:56, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

fliZ

Gene Synonym(s)

ECK1920, b1921, JW1906, yedH[1], yedH

Product Desc.

possible cell-density responsive regulator of sigmaF[2]; predicted regulator of FliA activity[3]

RpoS antagonist, transiently in post-exponential phase; timing factor allowing motility to continue for a while during starvation; not required for normal motility[4]

Product Synonyms(s)

predicted regulator of FliA activity[1], B1921[2][1], YedH[2][1], FliZ[2][1] , ECK1920, JW1906, yedH, b1921

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): fliAZY[2], fliA

Regulation/Activity
Quick Links



        

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Notes

[back to top]


FliZ antagonizes Crl activation of a subset of RpoS-dependent promoters, without changing RpoS levels, and thus resembles an anti-sigma factor at Crl-stimulated RpoS promoters (Pesavento, 2008). FliZ may also regulate FliA (sigma 28).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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