aes:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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From ECOO157CYC  
From ECOO157CYC  


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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF07859 PFAM:PF07859]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53474 SUPERFAMILY:53474]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23024:SF26 PTHR23024:SF26]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF07859 PF07859  alpha/beta hydrolase fold]
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[[EcoCyc]]
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EcoCyc:EG11101
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11101
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001089
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1093
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0001651
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
 
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:30, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000012172 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G16080 (score: 1.000; bootstrap: 100%)
  • AT1G68620 (score: 0.374)
  • AT5G06570 (score: 0.176)
  • AT5G62180 (score: 0.159)
  • AT3G48690 (score: 0.136)
  • AT3G48700 (score: 0.136)
  • AT3G63010 (score: 0.134)
  • AT2G45600 (score: 0.132)
  • AT5G27320 (score: 0.128)
  • AT1G47480 (score: 0.117)
  • AT3G05120 (score: 0.114)
  • AT1G19190 (score: 0.112)
  • AT5G23530 (score: 0.111)
  • AT1G49650 (score: 0.106)
  • AT2G03550 (score: 0.106)
  • AT2G45610 (score: 0.098)
  • AT1G49640 (score: 0.095)
  • AT1G49660 (score: 0.075)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00039138 (score: 1.000; bootstrap: 100%)
  • WBGene00036094 (score: 0.761)
  • WBGene00028135 (score: 0.729)
  • WBGene00028041 (score: 0.447)
  • WBGene00041259 (score: 0.086)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009186 (score: 1.000; bootstrap: 100%)
  • WBGene00011642 (score: 0.781)
  • WBGene00012810 (score: 0.429)
  • WBGene00017515 (score: 0.085)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000002638 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0185703 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0034491 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA10731-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:96790 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q53M20 (score: 1.000; bootstrap: 100%)
  • Q5Z4C9 (score: 1.000; bootstrap: 100%)
  • Q53M24 (score: 0.762)
  • Q8H5P4 (score: 0.686)
  • Q53KT2 (score: 0.611)
  • Q8H5P5 (score: 0.516)
  • Q7F1Y5 (score: 0.476)
  • Q8H5P9 (score: 0.456)
  • Q8GS14 (score: 0.416)
  • Q69J38 (score: 0.323)
  • Q6L545 (score: 0.225)
  • Q94JD7 (score: 0.186)
  • Q852M6 (score: 0.178)
  • Q8H3K4 (score: 0.167)
  • Q93VD4 (score: 0.166)
  • Q8H3K6 (score: 0.166)
  • Q8GRZ3 (score: 0.157)
  • Q8GSJ3 (score: 0.151)
  • Q6YSZ8 (score: 0.148)
  • Q8GSE8 (score: 0.141)
  • Q6Z4L7 (score: 0.134)
  • Q7XTC5 (score: 0.133)
  • Q8RZ79 (score: 0.119)
  • Q6Z6P8 (score: 0.116)
  • Q6ZIJ0 (score: 0.115)
  • Q6Z4M3 (score: 0.110)
  • Q6K7F5 (score: 0.109)
  • Q69PF3 (score: 0.108)
  • Q67J10 (score: 0.104)
  • Q69Y18 (score: 0.102)
  • Q6ZDG6 (score: 0.100)
  • Q69UB1 (score: 0.100)
  • Q67J09 (score: 0.099)
  • Q67IZ2 (score: 0.098)
  • Q67IZ5 (score: 0.095)
  • Q67J05 (score: 0.095)
  • Q67J04 (score: 0.095)
  • Q67J02 (score: 0.095)
  • Q67IZ8 (score: 0.095)
  • Q6YTH5 (score: 0.092)
  • Q67J07 (score: 0.090)
  • Q6ZDG8 (score: 0.087)
  • Q6ZDG5 (score: 0.083)
  • Q69Y21 (score: 0.081)
  • Q67IZ7 (score: 0.081)
  • Q67IZ3 (score: 0.081)
  • Q6ZDG4 (score: 0.080)
  • Q6ZDG3 (score: 0.078)
  • Q67TQ8 (score: 0.078)
  • Q6J657 (score: 0.075)
  • Q67TR6 (score: 0.075)
  • Q69Y17 (score: 0.074)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000018761 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000017805 (score: 0.354)
  • ENSRNOP00000032213 (score: 0.252)
  • ENSRNOP00000041767 (score: 0.186)
  • ENSRNOP00000033604 (score: 0.109)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC10393 (score: 1.000; bootstrap: 100%)
  • SPAPB1A112 (score: 0.059)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000165731 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000148315 (score: 0.537)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000026300 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

YBAC

From SHIGELLACYC

E. coli O157

YBAC

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:53474

Panther (EcoliWiki Page)

PTHR23024:SF26

Pfam (EcoliWiki Page)

PF07859 alpha/beta hydrolase fold

EcoCyc

EcoCyc:EG11101

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11101

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001089

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1093

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001651

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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