mrr:Quickview: Difference between revisions

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{|   id="I49aeed42df7f6" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[mrr:Gene|''mrr]]'' (synonyms: ''ECK4341, b4351, JW4314, mcrF'')<ref name='LIB:Riley_2006'/>
''mrr''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[mrr:Gene_Product(s)|Mrr product]]<ref name='LIB:Riley_2006'/>: methylated adenine and cytosine restriction protein product, B4351 product
''ECK4341, b4351, JW4314, mcrF''<ref name='LIB:Riley_2006'/>, mcrF''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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restriction of methylated adenine<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
restriction of methylated adenine<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Restriction of DNA with certain methylated adenine or cytosine residues<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''methylated adenine and cytosine restriction protein <ref name='LIB:Riley_2006'/>, B4351 <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Mrr <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4341, JW4314, mcrF, b4351''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:mrr|mrr]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:mrr|mrr]]<ref name='LIB:EcoCyc10.6'/>  
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|-
!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=mrr&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10612]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000605&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=mrr&loc=MG1655%3A4584972..4585886,W3110%3A4591629..4592543,REL606%3A4564924..4565838,BW2952%3A4523456..4524370]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4523456&end=4524370&gene=mrr&aa=mtvptydkfiepvlrylatkpegaaardvheaaadalglddsqrakvitsgqlvyknragwahdrlkraglsqslsrgkwcltpagfdwvashpqpmteqetnhlafafvnvklksrpdavdldpkadspdheelaksspddrldqalkelrdavadevlenllqvspsrfevivldvlhrlgygghrddlqrvggtgdggidgvisldklglekvyvqakrwqntvgrpelqafygalagqkakrgvfittsgftsqardfaqsvegmvlvdgerlvhlmienevgvssrllkvpkldmdyfe]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=mrr+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=mrr]]&nbsp;&nbsp;


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{{Quickview_table_help}}
{{Quickview_table_help}}
<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}
The N-terminus of overexpressed Mrr was determined, but the native RBS was not used. The initial Met was not clipped. although unVerified, this start is almost certainly correct. Mrr is normally cryptic, but is activated by high pressure stress, which leads to a recB-dependent SOS pathway activation.<ref name='LIB:EcoGene'/>




Latest revision as of 21:47, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

mrr

Gene Synonym(s)

ECK4341, b4351, JW4314, mcrF[1], mcrF

Product Desc.

restriction of methylated adenine[2][3]

Restriction of DNA with certain methylated adenine or cytosine residues[4]

Product Synonyms(s)

methylated adenine and cytosine restriction protein [1], B4351 [2][1], Mrr [2][1] , ECK4341, JW4314, mcrF, b4351

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): mrr[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


The N-terminus of overexpressed Mrr was determined, but the native RBS was not used. The initial Met was not clipped. although unVerified, this start is almost certainly correct. Mrr is normally cryptic, but is activated by high pressure stress, which leads to a recB-dependent SOS pathway activation.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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