yiaF:Quickview: Difference between revisions

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{|   id="B49b03234060f7" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[yiaF:Gene|''yiaF]]'' (synonyms: ''ECK3541, b3554, JW5655'')<ref name='LIB:Riley_2006'/>
''yiaF''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[yiaF:Gene_Product(s)|YiaF product]]<ref name='LIB:Riley_2006'/>: conserved protein product, B3554 product
''ECK3541, b3554, JW5655''<ref name='LIB:Riley_2006'/>, JW5655''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Probable lipoprotein, function unknown; Cys conserved<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''conserved protein<ref name='LIB:Riley_2006'/>, B3554<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YiaF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3541, JW5655, b3554''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yiaF|yiaF]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yiaF|yiaF]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yiaF&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12273]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002154&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yiaF&loc=MG1655%3A3717067..3716357,W3110%3A3921371..3922081,DH10B%3A3814644..3813934,REL606%3A3649502..3648792,BW2952%3A3604683..3605393]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3604683&end=3605393&gene=yiaF&aa=milpgrlrrkgilqacpglslsrqtrvcrcalflgerskkmatgkscsrwfaplaallmvvslsgcfdkegdqrkafidflqntvmrsgerlptltadqkkqfgpfvsdyailygysqqvnqamdsglrpvvdsvnairvpqdyvtqsgplremngslgvlaqqlqnaklqadaahsalkqsddlkpvfdqaftkvvttpadalqplipaaqtftqqlvmvgdyiaqqgtqvsfvangiqfptsqqaseynkliaplpaqhqafnqawttavtatq]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yiaF+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yiaF]]&nbsp;&nbsp;


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{{Quickview_table_help}}
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===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}
YiaF has been identified as a membrane-associated protein by 2D-MS, with a non-uniform membrane distribution, indicating both polar and septal bias. Interpretation of YiaF results in Lai et al. (2004) was complicated by use of a predicted start site at Met(-40). A null mutant has no obvious growth defect (Lai, 2004). Reported MS detection of a fragment from 19R-30E (stated as 50R-69E in Lai, 2004) may indicate the presence of an uncleaved precursor form in minicell membrane preparations. First 25 aa are predicted to be a type II signal peptide. HT_Cmplx47_Mem: MscS+YiaF.<ref name='LIB:EcoGene'/>




Latest revision as of 21:40, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yiaF

Gene Synonym(s)

ECK3541, b3554, JW5655[1], JW5655

Product Desc.

conserved protein[2][3]

Probable lipoprotein, function unknown; Cys conserved[4]

Product Synonyms(s)

conserved protein[1], B3554[2][1], YiaF[2][1] , ECK3541, JW5655, b3554

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yiaF[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


YiaF has been identified as a membrane-associated protein by 2D-MS, with a non-uniform membrane distribution, indicating both polar and septal bias. Interpretation of YiaF results in Lai et al. (2004) was complicated by use of a predicted start site at Met(-40). A null mutant has no obvious growth defect (Lai, 2004). Reported MS detection of a fragment from 19R-30E (stated as 50R-69E in Lai, 2004) may indicate the presence of an uncleaved precursor form in minicell membrane preparations. First 25 aa are predicted to be a type II signal peptide. HT_Cmplx47_Mem: MscS+YiaF.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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