hpf:Quickview: Difference between revisions

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{|   id="Q49aee918b9f31" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[hpf:Gene|''hpf]]'' (synonyms: ''yhbH, ECK3192, b3203, JW3170, rp5M'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
''hpf''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[hpf:Gene_Product(s)|YhbH product]]<ref name='LIB:Riley_2006'/>: predicted ribosome-associated, sigma 54 modulation protein product, B3203 product, Hpf product
''yhbH, ECK3192, b3203, JW3170, rp5M''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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probable sigma-54 modulation protein<ref name='LIB:EcoCyc10.6'/> predicted ribosome-associated, sigma 54 modulation protein<ref name='LIB:EcoCyc11.1'/>  
probable sigma-54 modulation protein<ref name='LIB:EcoCyc10.6'/>; predicted ribosome-associated, sigma 54 modulation protein<ref name='LIB:EcoCyc11.1'/>


Ribosome hibernation promoting factor HPF; stabilizes 70S dimers (100S); induced in stationary phase; raiA paralog has opposite effect on 70S dimers<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted ribosome-associated, sigma 54 modulation protein<ref name='LIB:Riley_2006'/>, B3203<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhbH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Hpf<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/> , ECK3192, JW3170, yhbH, b3203''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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Non-essential <ref name=PMID:17277072/>
Non-essential <ref name=PMID:17277072/>
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:lptB-rpoN-yhbH-ptsN-yhbJ|lptB-rpoN-yhbH-ptsN-yhbJ]]<ref name='LIB:EcoCyc10.6'/>, yhbG-rpoN-yhbH-ptsN-yhbJ, [[:Category:Txn_unit:rpoN-yhbH-ptsN-yhbJ-npr|rpoN-yhbH-ptsN-yhbJ-npr]]<ref name='LIB:EcoCyc10.6'/>, rpoN-ORFII-ORF-III-ORF-IV-ORFV, rpoN-yhbH-ptsN-yhbJ-ptsO  
transcription unit(s): [[:Category:Txn_unit:lptB-rpoN-yhbH-ptsN-yhbJ|lptB-rpoN-yhbH-ptsN-yhbJ]]<ref name='LIB:EcoCyc10.6'/>, yhbG-rpoN-yhbH-ptsN-yhbJ, [[:Category:Txn_unit:rpoN-yhbH-ptsN-yhbJ-npr|rpoN-yhbH-ptsN-yhbJ-npr]]<ref name='LIB:EcoCyc10.6'/>, rpoN-ORFII-ORF-III-ORF-IV-ORFV, rpoN-yhbH-ptsN-yhbJ-ptsO  
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=hpf&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11681]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001624&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=hpf&loc=MG1655%3A3344195..3344482,W3110%3A3346028..3346315,DH10B%3A3441940..3442227,BW2952%3A3231343..3231630]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3231343&end=3231630&gene=hpf&aa=mqlnitgnnveitealrefvtakfakleqyfdrinqvyvvlkvekvthtsdatlhvnggeihasaegqdmyaaidglidklarqltkhkdklkqh]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hpf+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=hpf]]&nbsp;&nbsp;


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===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}
Homologous to RpoN modulators. Induced by AI-2 pheromone. The rpoN operon contains rpoN-hpf-ptsN-yhbJ-npr.<ref name='LIB:EcoGene'/>




Latest revision as of 21:49, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

hpf

Gene Synonym(s)

yhbH, ECK3192, b3203, JW3170, rp5M[1][2]

Product Desc.

probable sigma-54 modulation protein[3]; predicted ribosome-associated, sigma 54 modulation protein[2]

Ribosome hibernation promoting factor HPF; stabilizes 70S dimers (100S); induced in stationary phase; raiA paralog has opposite effect on 70S dimers[4]

Product Synonyms(s)

predicted ribosome-associated, sigma 54 modulation protein[1], B3203[3][1], YhbH[3][1], Hpf[2][1] , ECK3192, JW3170, yhbH, b3203

Function from GO

<GO_nr />

Knock-Out Phenotype

Non-essential [5]

Regulation/Expression

transcription unit(s): lptB-rpoN-yhbH-ptsN-yhbJ[3], yhbG-rpoN-yhbH-ptsN-yhbJ, rpoN-yhbH-ptsN-yhbJ-npr[3], rpoN-ORFII-ORF-III-ORF-IV-ORFV, rpoN-yhbH-ptsN-yhbJ-ptsO

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Homologous to RpoN modulators. Induced by AI-2 pheromone. The rpoN operon contains rpoN-hpf-ptsN-yhbJ-npr.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Bubunenko, M et al. (2007) Essentiality of ribosomal and transcription antitermination proteins analyzed by systematic gene replacement in Escherichia coli. J. Bacteriol. 189 2844-53 PubMed
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