napH:Quickview: Difference between revisions

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{|   id="P49aeedcebca65" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[napH:Gene|''napH]]'' (synonyms: ''ECK2196, b2204, JW2192, yejZ'')<ref name='LIB:Riley_2006'/>
''napH''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[napH:Gene_Product(s)|NapH product]]<ref name='LIB:Riley_2006'/>: ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB) product, B2204 product, YejZ product
''ECK2196, b2204, JW2192, yejZ''<ref name='LIB:Riley_2006'/>, yejZ''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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ferredoxin-type protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
ferredoxin-type protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:NapGH, alternative quinol dehydrogenase|NapGH, alternative quinol dehydrogenase]]<ref name='LIB:EcoCyc11.1'/>,[[:Category:Complex:periplasmic nitrate reductase|periplasmic nitrate reductase]]<ref name='LIB:EcoCyc10.6'/>
Component of [[:Category:Complex:NapGH, alternative quinol dehydrogenase|NapGH, alternative quinol dehydrogenase]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:periplasmic nitrate reductase|periplasmic nitrate reductase]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Quinol dehydrogenase, membrane protein; polyferredoxin; mediates electron transfer from ubiquinol/naphthoquinone to NapAB, via NapC; non-haem, iron-sulphur protein<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB)<ref name='LIB:Riley_2006'/>, B2204<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YejZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NapH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2196, JW2192, yejZ, b2204''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:napFDAGHBC|napFDAGHBC]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:napFDAGHBC-ccmABCDEFGH|napFDAGHBC-ccmABCDEFGH]]<ref name='LIB:EcoCyc10.6'/>, aeg-46.5  
transcription unit(s): [[:Category:Txn_unit:napFDAGHBC|napFDAGHBC]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:napFDAGHBC-ccmABCDEFGH|napFDAGHBC-ccmABCDEFGH]]<ref name='LIB:EcoCyc10.6'/>, aeg-46.5  
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=napH&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12062]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001974&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=napH&loc=MG1655%3A2297600..2296737,W3110%3A2302912..2302049,REL606%3A2249567..2248704,DH10B%3A2388588..2387725,BW2952%3A2182542..2183405]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2182542&end=2183405&gene=napH&aa=manrkrdagrealekkgwwrshrwlvlrrlcqffvlgmflsgpwfgvwilhgnysssllfdtvpltdplmtlqslasghlpatvaltgaviitvlyalagkrlfcswvcplnpitdlanwlrrrfdlnqsatiprhiryvllvvilvgsaltgtliwewinpvslmgrslvmgfgsgallilalflfdllvvehgwcghicpvgalygvlgskgvitvaatdrqkcnrcmdcfhvcpephvlrapvldeqspvqvtsrdcmtcgrcvdvcsedvftittrwssgaks]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=napH+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=napH]]&nbsp;&nbsp;


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{{Quickview_table_help}}
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<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}
NapH is a four TM helix membrane protein, N- and C-in, with cytoplasmic C-terminal iron-sulfur cluster domain, using fusions and Westerns blots (Brondijk, 2002). NapH not required for menaquinol transfer (Brondijk, 2002). napH and yccM are paralogs.<ref name='LIB:EcoGene'/>




Latest revision as of 21:47, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

napH

Gene Synonym(s)

ECK2196, b2204, JW2192, yejZ[1], yejZ

Product Desc.

ferredoxin-type protein[2][3];

Component of NapGH, alternative quinol dehydrogenase[3]; periplasmic nitrate reductase[2][3]

Quinol dehydrogenase, membrane protein; polyferredoxin; mediates electron transfer from ubiquinol/naphthoquinone to NapAB, via NapC; non-haem, iron-sulphur protein[4]

Product Synonyms(s)

ferredoxin-type protein essential for electron transfer from ubiquinol to periplasmic nitrate reductase (NapAB)[1], B2204[2][1], YejZ[2][1], NapH[2][1] , ECK2196, JW2192, yejZ, b2204

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): napFDAGHBC[2], napFDAGHBC-ccmABCDEFGH[2], aeg-46.5

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


NapH is a four TM helix membrane protein, N- and C-in, with cytoplasmic C-terminal iron-sulfur cluster domain, using fusions and Westerns blots (Brondijk, 2002). NapH not required for menaquinol transfer (Brondijk, 2002). napH and yccM are paralogs.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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