pbpG:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
imported>Wikientrybot
Move help links into the <above> tag inside templates.
touch
 
(12 intermediate revisions by 2 users not shown)
Line 17: Line 17:
|}
|}
</noinclude>
</noinclude>
<!--box uid=421aa90e079fa326b6494f812ad13e79.6015.A46a99f4dc1e3a-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.6015.R49aeef3a02956-->
<!--
<!--
******************************************************************************************
******************************************************************************************
Line 24: Line 24:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{|   id="R49aeef3a02956" class=" tableEdit New_Quickview_Table"


|-
|-
!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
||
||
[[pbpG:Gene|''pbpG]]'' (synonyms: ''ECK2127, b2134, JW5355, yohB'')<ref name='LIB:Riley_2006'/>
''pbpG''
|-
|-
!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
||
||
[[pbpG:Gene_Product(s)|PbpG product]]<ref name='LIB:Riley_2006'/>: D-alanyl-D-alanine endopeptidase product, B2134 product, YohB product
''ECK2127, b2134, JW5355, yohB''<ref name='LIB:Riley_2006'/>, yohB''
|-
|-
!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
||
||
penicillin-binding protein 7<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
penicillin-binding protein 7<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Penicillin-binding proteins PBP7 and PBP8; murein meso-DAP-alanine DD endopeptidase, periplasmic; uniquely binds beta-lactam penems, lysing non-growing cells; mutant has biofilm defect<ref name='LIB:EcoGene'/>
|-
|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
||
''D-alanyl-D-alanine endopeptidase<ref name='LIB:Riley_2006'/>, B2134<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YohB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PbpG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2127, JW5355, yohB, b2134''
|-
!align=left {{table_heading_style}} |Function from GO
||
<GO_nr />
|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
||
||


|-
|-
!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
||
||
transcription unit(s): [[:Category:Txn_unit:pbpG|pbpG]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:pbpG|pbpG]]<ref name='LIB:EcoCyc10.6'/>  
Line 51: Line 60:
||
||


|-
!align=left {{table_heading_style}} |Quick Links
||
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=pbpG&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12015]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001933&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=pbpG&loc=MG1655%3A2222892..2221960,W3110%3A2228204..2227272,DH10B%3A2313900..2312968,REL606%3A2176108..2175176,BW2952%3A2114443..2115375]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2114443&end=2115375&gene=pbpG&aa=mlimpkfrvslfslalmlavpfapqavaktaaattasqpeiasgsamivdlntnkviysnhpdlvrpiasisklmtamvvldarlpldeklkvdisqtpemkgvysrvrlnseisrkdmlllalmssenraaaslahhypggykafikamnakakslgmnntrfveptglsvhnvstardltklliaskqypligqlsttredmatfsnptytlpfrntnhlvyrdnwniqltktgftnaaghclvmrtvinnkpvalvvmdafgkythfadasrlrtwietgkvmpvpaaalsykkqkaaqmaaagqtaqnd]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=pbpG+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=pbpG]]&nbsp;&nbsp;


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.6015.A46a99f4dc1e3a&page=6015&pagename={{FULLPAGENAMEE}}&type=1&template=Quickview_table edit table] ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.6015.R49aeef3a02956&page=6015&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.6015.A46a99f4dc1e3a-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.6015.R49aeef3a02956--></protect>
{{Quickview_table_help}}
{{Quickview_table_help}}
<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}
PBP8 is an artifactual OmpT-cleaved proteolytic degradation product of PBP7.  PBP7 and PBP8 are also referred to as PBP8a and PBP8b.  Earlier conventions had the PBP7 amd PBP8 names reversed.<ref name='LIB:EcoGene'/>




Latest revision as of 21:47, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

pbpG

Gene Synonym(s)

ECK2127, b2134, JW5355, yohB[1], yohB

Product Desc.

penicillin-binding protein 7[2][3]

Penicillin-binding proteins PBP7 and PBP8; murein meso-DAP-alanine DD endopeptidase, periplasmic; uniquely binds beta-lactam penems, lysing non-growing cells; mutant has biofilm defect[4]

Product Synonyms(s)

D-alanyl-D-alanine endopeptidase[1], B2134[2][1], YohB[2][1], PbpG[2][1] , ECK2127, JW5355, yohB, b2134

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): pbpG[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


PBP8 is an artifactual OmpT-cleaved proteolytic degradation product of PBP7. PBP7 and PBP8 are also referred to as PBP8a and PBP8b. Earlier conventions had the PBP7 amd PBP8 names reversed.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=pbpG:Quickview&oldid=1396208"