cydB:Quickview: Difference between revisions

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{|   id="N49aee2ce1c5c8" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[cydB:Gene|''cydB]]'' (synonyms: ''ECK0722, b0734, JW0723, cyd-2'')<ref name='LIB:Riley_2006'/>
''cydB''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[cydB:Gene_Product(s)|CydB product]]<ref name='LIB:Riley_2006'/>: cytochrome d terminal oxidase, subunit II product, B0734 product
''ECK0722, b0734, JW0723, cyd-2''<ref name='LIB:Riley_2006'/>
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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cytochrome <i>bd</i>-I terminal oxidase subunit II<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
cytochrome <i>bd</i>-I terminal oxidase subunit II<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:cytochrome <i>bd</i>-I terminal oxidase|cytochrome <i>bd</i>-I terminal oxidase]]<ref name='LIB:EcoCyc10.6'/>
Component of [[:Category:Complex:cytochrome bd-I terminal oxidase|cytochrome bd-I terminal oxidase]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Cytochrome d (bd-I) terminal oxidase subunit II; upregulated in biofilms and microaerobic conditions; aerobically repressed by H-NS; anaerobically repressed by Fnr<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''cytochrome d terminal oxidase, subunit II<ref name='LIB:Riley_2006'/>, B0734<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CydB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0722, JW0723, b0734''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:cydAB|cydAB]]<ref name='LIB:EcoCyc10.6'/>, OP00140  
transcription unit(s): [[:Category:Txn_unit:cydAB|cydAB]]<ref name='LIB:EcoCyc10.6'/>, OP00140  
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=cydB&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10174]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000169&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=cydB&loc=MG1655%3A772265..773404,W3110%3A773464..774603,DH10B%3A824857..825996,REL606%3A753924..755063,BW2952%3A675025..676164]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=675025&end=676164&gene=cydB&aa=midyevlrfiwwllvgvlligfavtdgfdmgvgmltrflgrndterriminsiaphwdgnqvwlitaggalfaawpmvyaaafsgfyvamilvlaslffrpvgfdyrskieetrwrnmwdwgifigsfvpplvigvafgnllqgvpfnvdeylrlyytgnffqllnpfgllagvvsvgmiitqgatylqmrtvgelhlrtrataqvaalvtlvcfalagvwvmygidgyvvkstmdhyaasnplnkevvreagawlvnfnntpilwaipalgvvlplltiltarmdkaawafvfssltlaciiltagiamfpfvmpsstmmnasltmwdatssqltlnvmtwvavvlvpiillytawcywkmfgritkediernthsly]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=cydB+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=cydB]]&nbsp;&nbsp;


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{{Quickview_table_help}}
{{Quickview_table_help}}
<protect><!--Quickview_notes--></protect>
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===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}
Fnr and ArcA regulons.  ArcA-P antagonizes H-NS repression of cydAB in response to limiting oxygen.<ref name='LIB:EcoGene'/>




Latest revision as of 21:51, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

cydB

Gene Synonym(s)

ECK0722, b0734, JW0723, cyd-2[1]

Product Desc.

cytochrome bd-I terminal oxidase subunit II[2][3];

Component of cytochrome bd-I terminal oxidase[2][3]

Cytochrome d (bd-I) terminal oxidase subunit II; upregulated in biofilms and microaerobic conditions; aerobically repressed by H-NS; anaerobically repressed by Fnr[4]

Product Synonyms(s)

cytochrome d terminal oxidase, subunit II[1], B0734[2][1], CydB[2][1] , ECK0722, JW0723, b0734

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): cydAB[2], OP00140

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Fnr and ArcA regulons. ArcA-P antagonizes H-NS repression of cydAB in response to limiting oxygen.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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