nrdR:Quickview: Difference between revisions

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{|   id="G49aeee5809f5f" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[nrdR:Gene|''nrdR]]'' (synonyms: ''ybaD, ECK0407, b0413, JW0403'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
''nrdR''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[nrdR:Gene_Product(s)|YbaD product]]<ref name='LIB:Riley_2006'/>: conserved protein product, B0413 product, NrdR product
''ybaD, ECK0407, b0413, JW0403''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>, JW0403, ribX''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Nrd regulon repressor<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''conserved protein<ref name='LIB:Riley_2006'/>, B0413<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbaD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NrdR<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/> , ECK0407, JW0403, ribX, ybaD, b0413''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ybaD|ybaD]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ybaD|ybaD]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=nrdR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11320]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001291&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=nrdR&loc=MG1655%3A432226..432675,W3110%3A432226..432675,DH10B%3A371557..372006,BW2952%3A334985..335434]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=334985&end=335434&gene=nrdR&aa=mhcpfcfavdtkvidsrlvgegssvrrrrqclvcnerfttfevaelvmprvvksndvrepfneeklrsgmlralekrpvssddvemainhiksqlratgerevpskmignlvmeqlkkldkvayirfasvyrsfedikefgeeiarled]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=nrdR+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=nrdR]]&nbsp;&nbsp;


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<protect><!--Quickview_notes--></protect>
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===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}
NrdR has been shown to regulate all three Nrd systems and to bind to the predicted NrdR binding sites (Torrents, 2007). Homologous to S. coelicolor NrdR (Borovok, 2004). Predicted binding sites has been reported for the nrdAB, nrdDG, and nrdHIEF operons (Rodionova, 2005). This corresponds to putative TF Binding SIte Cluster E581 for nrdD and nrdA (Qin, 2003). Binds TrxA (Kumar, 2004). First gene in putative nrdR-ribDE-nusB operon. Also refered to as nrdR in an unpublished comparative analysis (Borovok, 2005, in GenBank AM076828).<ref name='LIB:EcoGene'/>




Latest revision as of 21:47, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

nrdR

Gene Synonym(s)

ybaD, ECK0407, b0413, JW0403[1][2], JW0403, ribX

Product Desc.

conserved protein[3][2]

Nrd regulon repressor[4]

Product Synonyms(s)

conserved protein[1], B0413[3][1], YbaD[3][1], NrdR[2][1] , ECK0407, JW0403, ribX, ybaD, b0413

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ybaD[3]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


NrdR has been shown to regulate all three Nrd systems and to bind to the predicted NrdR binding sites (Torrents, 2007). Homologous to S. coelicolor NrdR (Borovok, 2004). Predicted binding sites has been reported for the nrdAB, nrdDG, and nrdHIEF operons (Rodionova, 2005). This corresponds to putative TF Binding SIte Cluster E581 for nrdD and nrdA (Qin, 2003). Binds TrxA (Kumar, 2004). First gene in putative nrdR-ribDE-nusB operon. Also refered to as nrdR in an unpublished comparative analysis (Borovok, 2005, in GenBank AM076828).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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