paoA:Quickview: Difference between revisions

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{{Tab On|Quickview|yagT}}{{Tab|Gene|yagT}}{{Tab|Gene Product(s)|yagT}}{{Tab|Expression|yagT}}{{Tab|Evolution|yagT}}{{Tab|On One Page|yagT}}{{TabsBottom}}
{{Tab On|Quickview|paoA}}{{Tab|Gene|paoA}}{{Tab|Gene Product(s)|paoA}}{{Tab|Expression|paoA}}{{Tab|Evolution|paoA}}{{Tab|On One Page|paoA}}{{TabsBottom}}
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{|   id="A49b02962c55b2" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[yagT:Gene|''yagT]]'' (synonyms: ''ECK0285, b0286, JW0280'')<ref name='LIB:Riley_2006'/>
''paoA''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[yagT:Gene_Product(s)|YagT product]]<ref name='LIB:Riley_2006'/>: predicted xanthine dehydrogenase, 2Fe-2S subunit product, B0286 product
''ECK0285, b0286, JW0280'', yagT<ref name='LIB:Riley_2006'/>, JW0280, yagT''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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putative oxidoreductase, Fe-S subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
putative oxidoreductase, Fe-S subunit<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Putative iron-sulfur binding protein, function unknown; possible subunit of a putative periplasmic YagRST xanthine dehydrogenase homolog<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted xanthine dehydrogenase, 2Fe-2S subunit<ref name='LIB:Riley_2006'/>, B0286<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PaoA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0285, JW0280, yagT, b0286''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yagQ|yagQ]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yagQ|yagQ]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yagT&s=search]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yagT&loc=MG1655%3A301797..301108,W3110%3A301797..301108,DH10B%3A277347..276658,REL606%3A272757..272068]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=272757&end=272068&gene=yagT&aa=msnqgeypednrvgkhephdlsltrrdlikvsaataatavvyphstlaasvpaatpapeimpltlkvngkteqlevdtrttlldtlrenlhligtkkgcdhgqcgactvlvngrrlnacltlavmhqgaeittieglgspdnlhpmqaafikhdgfqcgyctsgqicssvavlkeiqdgipshvtvdlvsapettadeirermsgnicrcgayanilaaiedaageiks]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yagT+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yagT]]&nbsp;&nbsp;


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{{Quickview_table_help}}
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<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}
Verified Tat substrate: YagT has a predicted Tat-only (Class I) 49 aa signal peptide (Tullman-Ercek, 2007). The internal TTG at codon 23 could alternatively be utilized to make a protein with a predicted 26 aa signal peptide.<ref name='LIB:EcoGene'/>




Latest revision as of 21:44, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

paoA

Gene Synonym(s)

ECK0285, b0286, JW0280, yagT[1], JW0280, yagT

Product Desc.

putative oxidoreductase, Fe-S subunit[2][3]

Putative iron-sulfur binding protein, function unknown; possible subunit of a putative periplasmic YagRST xanthine dehydrogenase homolog[4]

Product Synonyms(s)

predicted xanthine dehydrogenase, 2Fe-2S subunit[1], B0286[2][1], PaoA[2][1] , ECK0285, JW0280, yagT, b0286

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yagQ[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Verified Tat substrate: YagT has a predicted Tat-only (Class I) 49 aa signal peptide (Tullman-Ercek, 2007). The internal TTG at codon 23 could alternatively be utilized to make a protein with a predicted 26 aa signal peptide.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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