yfdV:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
imported>Wikientrybot
Move help links into the <above> tag inside templates.
touch
 
(8 intermediate revisions by 2 users not shown)
Line 29: Line 29:
*  
*  
****************************************************************************************** -->{{Evolution_homologs_table_help}}
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="N46abdaefe730b"  class=" tableEdit Evolution_homologs_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
Line 143: Line 143:
From ECOO157CYC  
From ECOO157CYC  


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.48721.N46abdaefe730b&page=48721&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.48721.N46abdaefe730b&page=48721&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.48721.N46abdaefe730b-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.48721.N46abdaefe730b-->
Line 168: Line 168:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="C46abdaff560fb"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF03547 PFAM:PF03547]
[http://pfam.janelia.org/family/PF03547 PF03547 Membrane transport protein]
|
|
   
   
|-
|
[[EcoCyc]]
|
EcoCyc:G7235
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG14144
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120003810
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB3896
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0007824
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.48721.C46abdaff560fb&page=48721&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.48721.C46abdaff560fb&page=48721&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.48721.C46abdaff560fb-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.48721.C46abdaff560fb-->
Line 197: Line 232:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="M46a81fca10ad0"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.48721.M46a81fca10ad0&page=48721&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.48721.M46a81fca10ad0&page=48721&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.48721.M46a81fca10ad0-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.48721.M46a81fca10ad0-->
Line 209: Line 244:
==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
 
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:34, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT1G23080 (score: 1.000; bootstrap: 100%)
  • AT1G70940 (score: 0.828)
  • AT2G01420 (score: 0.723)
  • AT1G73590 (score: 0.559)
  • AT5G57090 (score: 0.520)
  • AT1G77110 (score: 0.358)
  • AT5G15100 (score: 0.263)
  • AT5G16530 (score: 0.185)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000028831 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000019541 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000295500 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000027646 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000011696 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1915776 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • O81215 (score: 1.000; bootstrap: 100%)
  • Q5SMQ9 (score: 1.000; bootstrap: 100%)
  • Q67UL3 (score: 0.844)
  • Q6RK61 (score: 0.792)
  • Q5VP70 (score: 0.578)
  • Q5VP71 (score: 0.572)
  • Q651V6 (score: 0.540)
  • Q6L5F6 (score: 0.425)
  • Q5JLM1 (score: 0.249)
  • Q6ZIB5 (score: 0.239)
  • Q5VQY3 (score: 0.104)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000021626 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000143171 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000135971 (score: 0.513)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00031448001 (score: 1.000; bootstrap: 100%)
  • GSTENP00005430001 (score: 0.323)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000015032 (score: 1.000; bootstrap: 67%)

From Inparanoid:20070104

E. coli O157

Z3635

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF03547 Membrane transport protein

EcoCyc

EcoCyc:G7235

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14144

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003810

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3896

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007824

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=yfdV:Evolution&oldid=1390667"