cdd:Evolution: Difference between revisions

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Evolution

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism	Homologs (Statistics)	Comments
Arabidopsis thaliana	AT2G19570 (score: 1.000; bootstrap: 100%) AT4G29610 (score: 0.361) AT4G29600 (score: 0.306) AT4G29620 (score: 0.225) AT4G29640 (score: 0.199) AT4G29570 (score: 0.149) AT4G29650 (score: 0.114) AT4G29630 (score: 0.088) AT4G29580 (score: 0.074)	From Inparanoid:20070104
Bos taurus	ENSBTAP00000008074 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Danio rerio	ZDB-GENE-040426-1911 (score: 1.000; bootstrap: 100%) ZDB-CDNA-040425-2851 (score: 1.000; bootstrap: 100%) ZDB-CDNA-041114-88 (score: 0.365) ZDB-GENE-041114-88 (score: 0.365)	From Inparanoid:20070104
Drosophila melanogaster	FBgn0032001 (score: 1.000; bootstrap: 100%) FBgn0032002 (score: 0.369) FBgn0032003 (score: 0.280)	From Inparanoid:20070104
Homo sapiens	ENSP00000289839 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Mus musculus	MGI:1919519 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Pan troglodytes	ENSPTRP00000000499 (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Schizosaccharomyces pombe	SPAC15564c (score: 1.000; bootstrap: 100%)	From Inparanoid:20070104
Shigella flexneri	CDD	From SHIGELLACYC
E. coli O157	CDD	From ECOO157CYC
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Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database	Accession	Notes
Pfam (EcoliWiki Page)	PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region
Panther (EcoliWiki Page)	PTHR11644:SF12
Superfamily (EcoliWiki Page)	SUPERFAMILY:53927
Superfamily (EcoliWiki Page)	SUPERFAMILY:53927
Pfam (EcoliWiki Page)	PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region
EcoCyc	EcoCyc:EG10137	Escherichia coli str. K-12 substr. MG1655
EcoGene	EcoGene:EG10137	Escherichia coli str. K-12 substr. MG1655
RegulonDB	RegulonDB:ECK120000133	Escherichia coli str. K-12 substr. MG1655
EchoBASE	EchoBASE:EB0135	Escherichia coli str. K-12 substr. MG1655
ASAP	ASAP:ABE-0007086	Escherichia coli str. K-12 substr. MG1655
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Notes

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Name	URL	Comments
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References

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See Help:References for how to manage references in EcoliWiki.

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 From ECOO157CYC
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 !|Database!!Accession!!Notes
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-[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
+[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
 |
-[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00383 PFAM:PF00383]
+[http://pfam.janelia.org/family/PF00383 PF00383  Cytidine and deoxycytidylate deaminase zinc-binding region]
 |
+|-
+|
+[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
+|
+[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11644:SF12 PTHR11644:SF12]
+|
+|-
+|
+[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
+|
+[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53927 SUPERFAMILY:53927]
+|
+|-
+|
+[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
+|
+[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53927 SUPERFAMILY:53927]
+|
+|-
+|
+[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
+|
+[http://pfam.janelia.org/family/PF08211 PF08211  Cytidine and deoxycytidylate deaminase zinc-binding region ]
+|
+|-
+|
+[[EcoCyc]]
+|
+EcoCyc:EG10137
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EcoGene]]
+|
+EcoGene:EG10137
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[RegulonDB]]
+|
+RegulonDB:ECK120000133
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[EchoBASE]]
+|
+EchoBASE:EB0135
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
+|-
+|
+[[ASAP]]
+|
+ASAP:ABE-0007086
+|
+''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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 ==References==
 {{BacktoTop}}
+{{RefHelp}}
-<references/>
+<references />
-<noinclude>
 __NOTOC__
-</noinclude>
 ===Categories===
 {{BacktoTop}}

cdd:Evolution: Difference between revisions

Latest revision as of 08:33, 27 May 2013

Homologs in Other Organisms

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