fadD:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
imported>Wikientrybot
Move help links into the <above> tag inside templates.
touch
 
(10 intermediate revisions by 2 users not shown)
Line 29: Line 29:
*  
*  
****************************************************************************************** -->{{Evolution_homologs_table_help}}
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="W46abcae550814"  class=" tableEdit Evolution_homologs_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
Line 212: Line 212:
From ECOO157CYC  
From ECOO157CYC  


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.47591.W46abcae550814&page=47591&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.47591.W46abcae550814&page=47591&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.47591.W46abcae550814-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.47591.W46abcae550814-->
Line 237: Line 237:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="U46abcafe5c698"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00501 PFAM:PF00501]
[http://pfam.janelia.org/family/PF00501 PF00501 AMP-binding enzyme]
|
|
   
   
|-
|
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
|
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24096:SF44 PTHR24096:SF44]
|
|-
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=56801 SUPERFAMILY:56801]
|
|-
|
[[EcoCyc]]
|
EcoCyc:EG11530
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG11530
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120001484
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB1492
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0006005
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.47591.U46abcafe5c698&page=47591&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.47591.U46abcafe5c698&page=47591&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.47591.U46abcafe5c698-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.47591.U46abcafe5c698-->
Line 266: Line 315:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G46a812df52843"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.47591.G46a812df52843&page=47591&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.47591.G46a812df52843&page=47591&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.47591.G46a812df52843-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.47591.G46a812df52843-->
Line 278: Line 327:
==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
 
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:33, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000010831 (score: 1.000; bootstrap: 98%)
  • ENSANGP00000028839 (score: 0.077)
  • ENSANGP00000003832 (score: 0.051)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000004528 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G21240 (score: 1.000; bootstrap: 75%)
  • AT1G51680 (score: 0.766)
  • AT3G21230 (score: 0.568)
  • AT1G65060 (score: 0.528)
  • AT4G05160 (score: 0.207)
  • AT1G62940 (score: 0.191)
  • AT5G63380 (score: 0.136)
  • AT1G20480 (score: 0.134)
  • AT1G20510 (score: 0.132)
  • AT4G19010 (score: 0.125)
  • AT5G38120 (score: 0.115)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000028385 (score: 1.000; bootstrap: 87%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038536 (score: 1.000; bootstrap: 70%)
  • WBGene00038969 (score: 0.162)
  • WBGene00038149 (score: 0.160)
  • WBGene00024202 (score: 0.070)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00008669 (score: 1.000; bootstrap: 74%)
  • WBGene00007082 (score: 0.150)
  • WBGene00022849 (score: 0.147)
  • WBGene00007228 (score: 0.051)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000025110 (score: 1.000; bootstrap: 85%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000018792 (score: 1.000; bootstrap: 91%)
  • ENSCINP00000013265 (score: 0.276)
  • ENSCINP00000013885 (score: 0.086)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040912-169 (score: 1.000; bootstrap: 92%)
  • ZDB-CDNA-040912-171 (score: 1.000; bootstrap: 93%)
  • ZDB-CDNA-050809-17 (score: 0.614)
  • ZDB-GENE-050809-115 (score: 0.614)
  • ZDB-CDNA-040801-96 (score: 0.576)
  • ZDB-GENE-040801-88 (score: 0.576)
  • ZDB-CDNA-040425-2499 (score: 0.133)
  • ZDB-GENE-040426-1565 (score: 0.133)
  • ZDB-GENE-030131-6493 (score: 0.122)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0186164 (score: 1.000; bootstrap: 89%)
  • DDB0231737 (score: 0.737)
  • DDB0231736 (score: 0.719)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0027601 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21474-PA (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Oryza gramene

  • Q6YUH6 (score: 1.000; bootstrap: 98%)
  • Q42982 (score: 0.967)
  • Q9M7S3 (score: 0.803)
  • Q6Q297 (score: 0.499)
  • Q9M7S2 (score: 0.498)
  • Q67W82 (score: 0.494)
  • Q6ETN3 (score: 0.491)
  • Q6ZAC1 (score: 0.486)
  • Q6ZKV9 (score: 0.467)
  • P17814 (score: 0.459)
  • Q9M7S1 (score: 0.459)
  • Q41288 (score: 0.292)
  • Q67W81 (score: 0.262)
  • Q7XXL2 (score: 0.159)
  • Q8LSQ3 (score: 0.122)
  • Q5N6Y8 (score: 0.118)
  • Q7F1X5 (score: 0.088)
  • Q6YYZ2 (score: 0.076)
  • Q9FRQ0 (score: 0.069)
  • Q7XBT5 (score: 0.069)
  • Q8RU95 (score: 0.068)
  • Q69RG7 (score: 0.059)
  • Q70CS8 (score: 0.052)
  • Q8GVF9 (score: 0.052)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000004673 (score: 1.000; bootstrap: 91%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000158363 (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000036644 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

FADD

From SHIGELLACYC

E. coli O157

FADD

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00501 AMP-binding enzyme

Panther (EcoliWiki Page)

PTHR24096:SF44

Superfamily (EcoliWiki Page)

SUPERFAMILY:56801

EcoCyc

EcoCyc:EG11530

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11530

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001484

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1492

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006005

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=fadD:Evolution&oldid=1390228"