xthA:Evolution: Difference between revisions

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From ECOO157CYC  
From ECOO157CYC  


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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF03372 PFAM:PF03372]
[http://pfam.janelia.org/family/PF03372 PF03372 Endonuclease/Exonuclease/phosphatase family]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22748:SF0 PTHR22748:SF0]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=56219 SUPERFAMILY:56219]
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[[EcoCyc]]
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EcoCyc:EG11073
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11073
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001062
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1066
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0005829
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
 
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:33, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000020924 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G41460 (score: 1.000; bootstrap: 72%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000003559 (score: 1.000; bootstrap: 88%)
  • ENSBTAP00000000007 (score: 0.733)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038070 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00001372 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000008071 (score: 1.000; bootstrap: 86%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000016619 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-CDNA-040425-3708 (score: 1.000; bootstrap: 57%)
  • ZDB-GENE-040426-2761 (score: 0.995)
  • ZDB-CDNA-050612-208 (score: 0.925)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0185018 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0004584 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA16470-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000216714 (score: 1.000; bootstrap: 77%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000025143 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000008838 (score: 1.000; bootstrap: 70%)

From Inparanoid:20070104

Mus musculus

  • MGI:88042 (score: 1.000; bootstrap: 73%)

From Inparanoid:20070104

Oryza gramene

  • Q5VQJ9 (score: 1.000; bootstrap: 77%)
  • Q5VQJ8 (score: 0.363)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000010344 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000013176 (score: 1.000; bootstrap: 74%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC3D60 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000136145 (score: 1.000; bootstrap: 70%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00010570001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000027324 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Shigella flexneri

XTHA

From SHIGELLACYC

E. coli O157

XTHA

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF03372 Endonuclease/Exonuclease/phosphatase family

Panther (EcoliWiki Page)

PTHR22748:SF0

Superfamily (EcoliWiki Page)

SUPERFAMILY:56219

EcoCyc

EcoCyc:EG11073

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11073

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001062

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1066

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005829

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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