amtB:Evolution: Difference between revisions

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From ECOO157CYC  


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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00909 PFAM:PF00909]
[http://pfam.janelia.org/family/PF00909 PF00909 Ammonium Transporter Family]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11730:SF3 PTHR11730:SF3]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=111352 SUPERFAMILY:111352]
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[[EcoCyc]]
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EcoCyc:EG11821
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11821
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001753
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1768
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0001564
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
 
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:30, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000014231 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000006873 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G38290 (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000015012 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000007196 (score: 0.383)
  • ENSBTAP00000016227 (score: 0.319)
  • ENSBTAP00000001711 (score: 0.275)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00034965 (score: 1.000; bootstrap: 91%)
  • WBGene00034967 (score: 1.000; bootstrap: 91%)
  • WBGene00034968 (score: 0.644)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00000136 (score: 1.000; bootstrap: 93%)
  • WBGene00000133 (score: 0.616)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000003128 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000017563 (score: 0.505)
  • ENSCAFP00000024727 (score: 0.420)
  • ENSCAFP00000018961 (score: 0.250)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000012012 (score: 1.000; bootstrap: 97%)
  • ENSCINP00000008302 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030131-8229 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-030131-9542 (score: 0.549)
  • ZDB-GENE-040426-2595 (score: 0.485)
  • ZDB-GENE-000427-1 (score: 0.397)
  • ZDB-CDNA-040425-1552 (score: 0.348)
  • ZDB-CDNA-040425-3542 (score: 0.330)
  • ZDB-GENE-051213-1 (score: 0.289)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0185017 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0038309 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19641-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000268122 (score: 1.000; bootstrap: 100%)
  • ENSP00000274818 (score: 1.000; bootstrap: 100%)
  • ENSP00000255013 (score: 0.487)
  • ENSP00000331871 (score: 0.240)
  • ENSP00000294413 (score: 0.236)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000029855 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000023615 (score: 0.483)
  • ENSMMUP00000015845 (score: 0.381)
  • ENSMMUP00000014601 (score: 0.144)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000023518 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000024393 (score: 0.478)
  • ENSMODP00000021054 (score: 0.463)
  • ENSMODP00000017480 (score: 0.282)

From Inparanoid:20070104

Mus musculus

  • MGI:1888517 (score: 1.000; bootstrap: 100%)
  • MGI:1927379 (score: 0.463)
  • MGI:1202713 (score: 0.376)
  • MGI:1202882 (score: 0.138)

From Inparanoid:20070104

Oryza gramene

  • Q6T8L6 (score: 1.000; bootstrap: 92%)
  • Q851M9 (score: 0.844)
  • Q84KJ6 (score: 0.713)
  • Q69T29 (score: 0.660)
  • Q84KJ7 (score: 0.575)
  • Q84K95 (score: 0.575)
  • Q8S233 (score: 0.575)
  • Q8S230 (score: 0.565)
  • Q8W300 (score: 0.089)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000012708 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000002466 (score: 0.463)
  • ENSPTRP00000031201 (score: 0.437)
  • ENSPTRP00000043652 (score: 0.087)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000021109 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000026396 (score: 0.466)
  • ENSRNOP00000040256 (score: 0.358)
  • ENSRNOP00000048811 (score: 0.358)
  • ENSRNOP00000023187 (score: 0.139)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YNL142W (score: 1.000; bootstrap: 100%)
  • YPR138C (score: 1.000; bootstrap: 100%)
  • YGR121C (score: 0.724)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCPB1C111 (score: 1.000; bootstrap: 100%)
  • SPAC6644 (score: 0.278)
  • SPAC2E1P32c (score: 0.116)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000177155 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000162837 (score: 0.436)
  • NEWSINFRUP00000161244 (score: 0.420)
  • NEWSINFRUP00000144294 (score: 0.392)
  • NEWSINFRUP00000164777 (score: 0.346)
  • NEWSINFRUP00000136949 (score: 0.083)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00006962001 (score: 1.000; bootstrap: 100%)
  • GSTENP00024318001 (score: 0.551)
  • GSTENP00018505001 (score: 0.505)
  • GSTENP00017669001 (score: 0.487)
  • GSTENP00022829001 (score: 0.467)
  • GSTENP00031388001 (score: 0.158)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000038537 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000043046 (score: 0.475)
  • ENSXETP00000024372 (score: 0.324)
  • ENSXETP00000026333 (score: 0.277)
  • ENSXETP00000007964 (score: 0.220)

From Inparanoid:20070104

Shigella flexneri

AMTB

From SHIGELLACYC

E. coli O157

AMTB

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00909 Ammonium Transporter Family

Panther (EcoliWiki Page)

PTHR11730:SF3

Superfamily (EcoliWiki Page)

SUPERFAMILY:111352

EcoCyc

EcoCyc:EG11821

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11821

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001753

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1768

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001564

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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