ycgR:Quickview: Difference between revisions

Latest revision as of 21:43, 27 May 2013

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Quickview

Gene

Standard Name	ycgR
Gene Synonym(s)	ECK1182, b1194, JW1183^[1], JW1183
Product Desc.	protein involved regulation of flagellar motility^[2]^[3] Cyclic-di-GMP receptor, regulates motility; mutation suppresses motility defect of hns and yhjH mutants^[4]
Product Synonyms(s)	protein involved in flagellar function^[1], B1194^[2]^[1], YcgR^[2]^[1] , ECK1182, JW1183, b1194
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): ycgR^[2]
Regulation/Activity
Quick Links
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Notes

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YcgR contains a C-terminal PilZ domain, which binds cyclic-di-GMP; binding of c-di-GMP is involved in motility regulation. FlhDC flagellar regulon.^[4]

References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoGene-4] 4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[1]

[2]

[3]

[4]

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 |-
-!{{table_heading_style}} |Gene Name
+!align=left {{table_heading_style}} |Standard Name
-|
+||
-[[ycgR:Gene|''ycgR]]'' (synonyms: ''ECK1182, b1194, JW1183'')<ref name='LIB:Riley_2006'/>
+''ycgR''
 |-
-!{{table_heading_style}} |Product(s)
+!align=left {{table_heading_style}} |Gene Synonym(s)
-|
+||
-[[ycgR:Gene_Product(s)|YcgR product]]<ref name='LIB:Riley_2006'/>: protein involved in flagellar function<ref name='LIB:Riley_2006'/>, B1194<ref name='LIB:EcoCyc10.6'/>, YcgR<ref name='LIB:EcoCyc10.6'/>
+''ECK1182, b1194, JW1183''<ref name='LIB:Riley_2006'/>, JW1183''
 |-
-!{{table_heading_style}} |Description
+!align=left {{table_heading_style}} |Product Desc.
-|
+||
 protein involved regulation of flagellar motility<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
+Cyclic-di-GMP receptor, regulates motility; mutation suppresses motility defect of hns and yhjH mutants<ref name='LIB:EcoGene'/>
+|-
+!align=left {{table_heading_style}} |Product Synonyms(s)
+||
+''protein involved in flagellar function<ref name='LIB:Riley_2006'/>, B1194<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcgR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1182, JW1183, b1194''
+|-
+!align=left {{table_heading_style}} |Function from GO
+||
+<GO_nr />
 |-
-!{{table_heading_style}} |Knock-Out Phenotype
+!align=left {{table_heading_style}} |Knock-Out Phenotype
-|
+||
 |-
-!{{table_heading_style}} |Regulation/Expression
+!align=left {{table_heading_style}} |Regulation/Expression
-|
+||
-transcription unit(s): [[:Category:txn_units:ycgR|ycgR]]<ref name='LIB:EcoCyc10.6'/>
+transcription unit(s): [[:Category:Txn_unit:ycgR|ycgR]]<ref name='LIB:EcoCyc10.6'/>
 |-
-!{{table_heading_style}} |Regulation/Activity
+!align=left {{table_heading_style}} |Regulation/Activity
-|
+||
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+!align=left {{table_heading_style}} |Quick Links
+||
+[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ycgR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6623]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003218&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ycgR&loc=MG1655%3A1243750..1243016,W3110%3A1246104..1245370,DH10B%3A1283991..1283257,REL606%3A1244677..1243943,BW2952%3A1131737..1132471]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1131737&end=1132471&gene=ycgR&aa=mshyheqflkqnplavlgvlrdlhkaaiplrlswnggqliskllaitpdklvldfgsqaedniavlkaqhititaetqgakveftveqlqqseylqlpafitvppptlwfvqrrryfrisaplhppyfcqtkladnstlrfrlydlslggmgalletakpaelqegmrfaqievnmgqwgvfhfdaqlisiserkvidgknetittprlsfrflnvsptverqlqriifslerearekadkvrd]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ycgR+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ycgR]]&nbsp;&nbsp;
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-==Notes==
+===Notes===
+{{BacktoTop}}
+YcgR contains a C-terminal PilZ domain, which binds cyclic-di-GMP; binding of c-di-GMP is involved in motility regulation.  FlhDC flagellar regulon.<ref name='LIB:EcoGene'/>
 <noinclude>
 ==References==
+{{BacktoTop}}
 <references/>
 </noinclude>

ycgR:Quickview: Difference between revisions

Latest revision as of 21:43, 27 May 2013

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