ycgF:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
imported>WikiEntryBot
Automated import of articles
 
touch
 
(19 intermediate revisions by 3 users not shown)
Line 1: Line 1:
<!--PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE, YOU'RE PROBABLY IN THE WRONG PLACE-->
<!--
***************************************************************************************************************************************************
*
*
*              PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,
*                            YOU'RE PROBABLY IN THE WRONG PLACE
*
*
***************************************************************************************************************************************************
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}   
<noinclude>{{TabsTop}}   
{{Tab On|Quickview|ycgF}}{{Tab|Gene|ycgF}}{{Tab|Gene Product(s)|ycgF}}{{Tab|Expression|ycgF}}{{Tab|Evolution|ycgF}}{{Tab|On One Page|ycgF}}{{TabsBottom}}
{{Tab On|Quickview|ycgF}}{{Tab|Gene|ycgF}}{{Tab|Gene Product(s)|ycgF}}{{Tab|Expression|ycgF}}{{Tab|Evolution|ycgF}}{{Tab|On One Page|ycgF}}{{TabsBottom}}
{|
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"  
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"  
|{{Sub}}[[#References| References]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|{{Sub}}[[Talk:{{PAGENAMEE}}| Suggestions]]
|}
|}
</noinclude>
</noinclude>
<!--box uid=421aa90e079fa326b6494f812ad13e79..B469f90282a5d7-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.4063.F49b02bb9b7995-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
{|{{Prettytable}}
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|   id="F49b02bb9b7995"  class=" tableEdit New_Quickview_Table" 
 
|-
|-
!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
|
||
[[ycgF:Gene|''ycgF]]'' (synonyms: ''ECK1150, b1163, JW1150'')<ref name='LIB:Riley_2006'/>
''ycgF''
|-
|-
!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
|
||
[[ycgF:Gene_Product(s)|YcgF product]]<ref name='LIB:Riley_2006'/>: predicted FAD-binding phosphodiesterase<ref name='LIB:Riley_2006'/>, B1163<ref name='LIB:EcoCyc10.6'/>, YcgF<ref name='LIB:EcoCyc10.6'/>, Blrp<ref name='LIB:EcoCyc10.6'/>
''ECK1150, b1163, JW1150''<ref name='LIB:Riley_2006'/>, JW1150''
|-
|-
!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
|
||
predicted FAD-binding phosphodiesterase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted FAD-binding phosphodiesterase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


 
Putative cyclic-di-GMP phosphodiesterase, function unknown; cold shock gene, binds FAD<ref name='LIB:EcoGene'/>
|-
!align=left {{table_heading_style}} |Product Synonyms(s)
||
''predicted FAD-binding phosphodiesterase<ref name='LIB:Riley_2006'/>, B1163<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcgF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Blrp<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1150, JW1150, b1163''
|-
!align=left {{table_heading_style}} |Function from GO
||
<GO_nr />
|-
|-
!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
|
||


|-
|-
!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
|
||
transcription unit(s): [[:Category:txn_units:ycgF|ycgF]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ycgF|ycgF]]<ref name='LIB:EcoCyc10.6'/>  
|-
|-
!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
|
||


|-
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..B469f90282a5d7&page=&pagename={{FULLPAGENAMEE}} edit table]
!align=left {{table_heading_style}} |Quick Links
||
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ycgF&s=search]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ycgF&loc=MG1655%3A1214698..1213487,W3110%3A1217052..1215841,DH10B%3A1254939..1253728,REL606%3A1215636..1214425,BW2952%3A1102208..1103419]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1102208&end=1103419&gene=ycgF&aa=mlttliyrshirddepvkkieemvsianrrnmqsdvtgillfngshffqllegpeeqvkmiyraicqdprhynivellcdyaparrfgkagmelfdlrlherddvlqavfdkgtskfqltyddralqffrtfvlateqstyfeipaedswlfiadgsdkeldscalsptindhfafhpivdplsrriiafeaivqknedspsaiavgqrkdgeiytadlkskalaftmahalelgdkmisinllpmtlvnepdavsfllneikanalvpeqiiveftesevisrfdefaeaikslkaagisvaidhfgagfagllllsrfqpdrikisqelitnvhksgprqaiiqaiikcctsleiqvsamgvatpeewmwlesagiemfqgdlfakaklngipsiawpekk]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ycgF+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ycgF]]&nbsp;&nbsp;
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.4063.F49b02bb9b7995&page=4063&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..B469f90282a5d7-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.4063.F49b02bb9b7995--></protect>
{{Quickview_table_help}}
<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
==Notes==
===Notes===
{{BacktoTop}}
 
The cold-inducibility of ycgF is dependent on the presence of the pnp gene. YcgF has an N-terminal blue light-responsive FAD-binding BLUF domain, and a C-terminal cyclic-di-GMP phosphodiesterase EAL domain.<ref name='LIB:EcoGene'/>
 




<noinclude>
<noinclude>
==References==
==References==
{{BacktoTop}}
<references/>
<references/>
</noinclude>
</noinclude>

Latest revision as of 21:43, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ycgF

Gene Synonym(s)

ECK1150, b1163, JW1150[1], JW1150

Product Desc.

predicted FAD-binding phosphodiesterase[2][3]

Putative cyclic-di-GMP phosphodiesterase, function unknown; cold shock gene, binds FAD[4]

Product Synonyms(s)

predicted FAD-binding phosphodiesterase[1], B1163[2][1], YcgF[2][1], Blrp[2][1] , ECK1150, JW1150, b1163

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ycgF[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


The cold-inducibility of ycgF is dependent on the presence of the pnp gene. YcgF has an N-terminal blue light-responsive FAD-binding BLUF domain, and a C-terminal cyclic-di-GMP phosphodiesterase EAL domain.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ycgF:Quickview&oldid=1395341"