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{{Tab On|Quickview|rutF}}{{Tab|Gene|rutF}}{{Tab|Gene Product(s)|rutF}}{{Tab|Expression|rutF}}{{Tab|Evolution|rutF}}{{Tab|On One Page|rutF}}{{TabsBottom}}
{{Tab On|Quickview|rutF}}{{Tab|Gene|rutF}}{{Tab|Gene Product(s)|rutF}}{{Tab|Expression|rutF}}{{Tab|Evolution|rutF}}{{Tab|On One Page|rutF}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[rutF:Gene|''rutF]]'' (synonyms: ''ycdH, ECK0998, b1007, JW5138'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''rutF''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[rutF:Gene_Product(s)|YcdH product]]<ref name='LIB:Riley_2006'/>: predicted oxidoreductase, flavin:NADH component<ref name='LIB:Riley_2006'/>, YcdH<ref name='LIB:EcoCyc10.6'/>, B1007<ref name='LIB:EcoCyc10.6'/>, RutF<ref name='LIB:EcoCyc10.6'/>
''ycdH, ECK0998, b1007, JW5138''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, JW5138''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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predicted flavin reductase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted flavin reductase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


 
Gene in rut operon for pyrimidine nitrogen catabolism; putative flavin:NADH reductase<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted oxidoreductase, flavin:NADH component<ref name='LIB:Riley_2006'/>, YcdH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1007<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RutF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0998, JW5138, ycdH, b1007''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:rutABCDEFG|rutABCDEFG]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:rutABCDEFG|rutABCDEFG]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=rutF&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6518]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003118&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=rutF&loc=MG1655%3A1069577..1069083,W3110%3A1070776..1070282,DH10B%3A1123505..1123011,REL606%3A1086144..1086638,BW2952%3A972051..972545]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=972051&end=972545&gene=rutF&aa=mscmgaavniittdgpagragftasavcsvtdtpptllvclnrgasvwpafnenrtlcvntlsagqeplsnlfggktpmehrfaaarwqtgvtgcpqleealvsfdcrisqvvsvgthdilfcaieaihrhttpyglvwfdrsyhalmrpac]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rutF+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=rutF]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
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NtrC regulon. The rut operon is required for the utilization of thymidine, uridine and cytidine as nitrogen sources at 37C, but not at room temperature.<ref name='LIB:EcoGene'/>
 




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==References==
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Latest revision as of 21:46, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rutF

Gene Synonym(s)

ycdH, ECK0998, b1007, JW5138[1][2], JW5138

Product Desc.

predicted flavin reductase[2][3]

Gene in rut operon for pyrimidine nitrogen catabolism; putative flavin:NADH reductase[4]

Product Synonyms(s)

predicted oxidoreductase, flavin:NADH component[1], YcdH[2][1], B1007[2][1], RutF[2][1] , ECK0998, JW5138, ycdH, b1007

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rutABCDEFG[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


NtrC regulon. The rut operon is required for the utilization of thymidine, uridine and cytidine as nitrogen sources at 37C, but not at room temperature.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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