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{{Tab On|Quickview|ybgF}}{{Tab|Gene|ybgF}}{{Tab|Gene Product(s)|ybgF}}{{Tab|Expression|ybgF}}{{Tab|Evolution|ybgF}}{{Tab|On One Page|ybgF}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[ybgF:Gene|''ybgF]]'' (synonyms: ''ECK0731, b0742, JW0732'')<ref name='LIB:Riley_2006'/>
''ybgF''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[ybgF:Gene_Product(s)|YbgF product]]<ref name='LIB:Riley_2006'/>: predicted protein<ref name='LIB:Riley_2006'/>, B0742<ref name='LIB:EcoCyc10.6'/>, YbgF<ref name='LIB:EcoCyc10.6'/>, [[:Category:Complex:Tol-Pal Cell Envelope Complex|Tol-Pal Cell Envelope Complex]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Complex:The Tol-Pal Cell Envelope Complex|The Tol-Pal Cell Envelope Complex]]<ref name='LIB:EcoCyc11.1'/>, [[:Category:Complex:The Colicin A Import System|The Colicin A Import System]]<ref name='LIB:EcoCyc11.1'/>, [[:Category:Complex:Colicin S4 Transport System|Colicin S4 Transport System]]<ref name='LIB:EcoCyc11.1'/>
''ECK0731, b0742, JW0732''<ref name='LIB:Riley_2006'/>, JW0732''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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predicted periplasmic protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted periplasmic protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:Tol-Pal Cell Envelope Complex|Tol-Pal Cell Envelope Complex]]<ref name='LIB:EcoCyc10.6'/>; [[:Category:Complex:The Tol-Pal Cell Envelope Complex|The Tol-Pal Cell Envelope Complex]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:The Colicin A Import System|The Colicin A Import System]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:Colicin S4 Transport System|Colicin S4 Transport System]]<ref name='LIB:EcoCyc11.1'/>


Binds TolA; last gene in tolB-pal operon; localized to periplasm; secAB-dependent cleavage/secretion; no phenotype of kan insertion<ref name='LIB:EcoGene'/>
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''predicted protein<ref name='LIB:Riley_2006'/>, B0742<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbgF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0731, JW0732, b0742''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:tolB-pal-ybgF|tolB-pal-ybgF]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:tolB-pal-ybgF|tolB-pal-ybgF]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ybgF&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12854]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002402&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ybgF&loc=MG1655%3A778821..779612,W3110%3A780020..780811,DH10B%3A831413..832204,REL606%3A760480..761271,BW2952%3A681581..682372]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=681581&end=682372&gene=ybgF&aa=mssnfrhqllslsllvgiaapwaafaqapissvgsgsvedrvtqlerisnahsqlltqlqqqlsdnqsdidslrgqiqenqyqlnqvverqkqillqidslssggaaaqstsgdqsgaaasttptadagtanagapvksgnantdynaaialvqdksrqddamvafqnfiknypdstylpnanywlgqlnynkgkkddaayyfasvvknypkspkaadamfkvgvimqdkgdtakakavyqqviskypgtdgakqaqkrlnam]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ybgF+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ybgF]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
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First 26 aa predicted to be type I signal peptide.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 21:55, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ybgF

Gene Synonym(s)

ECK0731, b0742, JW0732[1], JW0732

Product Desc.

predicted periplasmic protein[2][3];

Component of Tol-Pal Cell Envelope Complex[2]; The Tol-Pal Cell Envelope Complex[3]; The Colicin A Import System[3]; Colicin S4 Transport System[3]

Binds TolA; last gene in tolB-pal operon; localized to periplasm; secAB-dependent cleavage/secretion; no phenotype of kan insertion[4]

Product Synonyms(s)

predicted protein[1], B0742[2][1], YbgF[2][1] , ECK0731, JW0732, b0742

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): tolB-pal-ybgF[2]

Regulation/Activity
Quick Links



        

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Notes

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First 26 aa predicted to be type I signal peptide.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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