yihG:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
Edited by wikibot
touch
 
(11 intermediate revisions by 2 users not shown)
Line 25: Line 25:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|class = 'sortable' {{Prettytable}} id='213528'
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="U46ac0d9346183"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
|-  
|
|
''Anopheles gambiae''   
''Anopheles gambiae''   
Line 39: Line 39:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Bos taurus''   
''Bos taurus''   
Line 48: Line 48:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Canis familiaris''   
''Canis familiaris''   
Line 57: Line 57:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Danio rerio''   
''Danio rerio''   
Line 69: Line 69:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
Line 77: Line 77:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Gallus gallus''   
''Gallus gallus''   
Line 88: Line 88:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Homo sapiens''   
''Homo sapiens''   
Line 98: Line 98:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Macaca mulatta''   
''Macaca mulatta''   
Line 106: Line 106:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Monodelphis domestica''   
''Monodelphis domestica''   
Line 116: Line 116:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Mus musculus''   
''Mus musculus''   
Line 125: Line 125:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Pan troglodytes''   
''Pan troglodytes''   
Line 132: Line 132:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Rattus norvegicus''   
''Rattus norvegicus''   
Line 141: Line 141:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
Line 149: Line 149:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Takifugu rubripes''   
''Takifugu rubripes''   
Line 158: Line 158:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
Line 167: Line 167:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Shigella flexneri''   
''Shigella flexneri''   
Line 174: Line 174:
|
|
From SHIGELLACYC  
From SHIGELLACYC  
|-
|-  
|
|
''E. coli'' O157  
''E. coli'' O157  
Line 181: Line 181:
|
|
From ECOO157CYC  
From ECOO157CYC  
|-class='sortbottom'
 
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51693.U46ac0d9346183&page=51693&pagename={{FULLPAGENAMEE}} edit table] || ||
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51693.U46ac0d9346183&page=51693&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.51693.U46ac0d9346183-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.51693.U46ac0d9346183-->
{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
Line 202: Line 203:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' {{Prettytable}} id='213529'
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A46ac0dab25446"  class=" tableEdit Gene_accessions_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF01553 PF01553  Acyltransferase]
|
|-
|
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
|
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10983:SF1 PTHR10983:SF1]
|
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01553 PFAM:PF01553]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=69593 SUPERFAMILY:69593]
|
|
   
   
|-class='sortbottom'
|-
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51693.A46ac0dab25446&page=51693&pagename={{FULLPAGENAMEE}} edit table] || ||
|
[[EcoCyc]]
|
EcoCyc:EG11833
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG11833
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120001765
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB1780
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0012611
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51693.A46ac0dab25446&page=51693&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.51693.A46ac0dab25446-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.51693.A46ac0dab25446-->
{{Evolution_families_table_help}}
 
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
Line 230: Line 281:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='115679'
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="I46a849fdd0262"  class=" tableEdit Links_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Name!!URL!!Comments
!|Name!!URL!!Comments
|-class='sortbottom'
 
|[{{SERVER}}{{SCRIPTPATH}}/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51693.I46a849fdd0262&page=51693&pagename={{FULLPAGENAMEE}} edit table] || ||
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51693.I46a849fdd0262&page=51693&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.51693.I46a849fdd0262-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.51693.I46a849fdd0262-->
{{Links_help}}
 


==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:37, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000014633 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000010089 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000027260 (score: 0.512)
  • ENSBTAP00000006476 (score: 0.056)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000001094 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000015674 (score: 0.507)
  • ENSCAFP00000007923 (score: 0.072)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-2430 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-040426-2765 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3712 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3377 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-2871 (score: 0.604)
  • ZDB-GENE-040426-1924 (score: 0.604)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0187976 (score: 1.000; bootstrap: 100%)
  • DDB0190609 (score: 0.156)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000018851 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000026077 (score: 0.657)
  • ENSGALP00000014726 (score: 0.092)
  • ENSGALP00000026290 (score: 0.063)
  • ENSGALP00000022423 (score: 0.057)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000310551 (score: 1.000; bootstrap: 100%)
  • ENSP00000285518 (score: 0.072)
  • ENSP00000332989 (score: 0.067)
  • ENSP00000314036 (score: 0.065)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000024560 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000009585 (score: 0.469)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000019371 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000008112 (score: 0.094)
  • ENSMODP00000026306 (score: 0.080)
  • ENSMODP00000015125 (score: 0.076)

From Inparanoid:20070104

Mus musculus

  • MGI:1196345 (score: 1.000; bootstrap: 100%)
  • MGI:2684937 (score: 0.066)
  • MGI:1915512 (score: 0.052)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000034182 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000037069 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000050960 (score: 0.064)
  • ENSRNOP00000024213 (score: 0.054)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YBR042C (score: 1.000; bootstrap: 100%)
  • YDR018C (score: 0.311)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000134218 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000148221 (score: 0.573)
  • NEWSINFRUP00000149462 (score: 0.061)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00010213001 (score: 1.000; bootstrap: 100%)
  • GSTENP00030727001 (score: 0.486)
  • GSTENP00031987001 (score: 0.054)

From Inparanoid:20070104

Shigella flexneri

YIHG

From SHIGELLACYC

E. coli O157

YIHG

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01553 Acyltransferase

Panther (EcoliWiki Page)

PTHR10983:SF1

Superfamily (EcoliWiki Page)

SUPERFAMILY:69593

EcoCyc

EcoCyc:EG11833

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11833

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001765

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1780

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012611

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=yihG:Evolution&oldid=1391824"