yicI:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46ac07b3d289f"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01055 PF01055  Glycosyl hydrolases family 31 ]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51011 SUPERFAMILY:51011]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51445 SUPERFAMILY:51445]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01055 PFAM:PF01055]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22762:SF32 PTHR22762:SF32]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=74650 SUPERFAMILY:74650]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=117125 SUPERFAMILY:117125]
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[[EcoCyc]]
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EcoCyc:EG11685
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11685
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001628
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1636
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0011951
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
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===Categories===
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Latest revision as of 08:36, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000010269 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G11720 (score: 1.000; bootstrap: 100%)
  • AT1G68560 (score: 0.379)
  • AT3G45940 (score: 0.359)
  • AT5G63840 (score: 0.088)
  • AT3G23640 (score: 0.083)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000022558 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000011675 (score: 0.423)
  • ENSBTAP00000021325 (score: 0.083)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038595 (score: 1.000; bootstrap: 100%)
  • WBGene00030014 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009583 (score: 1.000; bootstrap: 100%)
  • WBGene00018682 (score: 0.412)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000023209 (score: 1.000; bootstrap: 87%)
  • ENSCAFP00000014854 (score: 0.440)
  • ENSCAFP00000008357 (score: 0.084)
  • ENSCAFP00000005735 (score: 0.065)
  • ENSCAFP00000021299 (score: 0.064)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000005372 (score: 1.000; bootstrap: 88%)
  • ENSCINP00000009954 (score: 0.060)
  • ENSCINP00000008112 (score: 0.056)
  • ENSCINP00000016092 (score: 0.053)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0191113 (score: 1.000; bootstrap: 100%)
  • DDB0190556 (score: 0.087)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0027588 (score: 1.000; bootstrap: 73%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA13011-PA (score: 1.000; bootstrap: 72%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000014691 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000006635 (score: 0.094)
  • ENSGALP00000015467 (score: 0.072)
  • ENSGALP00000011397 (score: 0.056)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000278885 (score: 1.000; bootstrap: 90%)
  • ENSP00000326227 (score: 0.426)
  • ENSP00000305692 (score: 0.084)
  • ENSP00000316431 (score: 0.060)
  • ENSP00000264382 (score: 0.057)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000023811 (score: 1.000; bootstrap: 91%)
  • ENSMMUP00000002040 (score: 0.412)
  • ENSMMUP00000012538 (score: 0.110)
  • ENSMMUP00000001743 (score: 0.084)
  • ENSMMUP00000026204 (score: 0.062)
  • ENSMMUP00000021381 (score: 0.061)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000009785 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000022337 (score: 0.443)
  • ENSMODP00000011228 (score: 0.068)
  • ENSMODP00000002654 (score: 0.068)
  • ENSMODP00000000080 (score: 0.059)

From Inparanoid:20070104

Mus musculus

  • MGI:1097667 (score: 1.000; bootstrap: 85%)
  • MGI:1923301 (score: 1.000; bootstrap: 86%)
  • MGI:95609 (score: 0.105)
  • MGI:1917233 (score: 0.087)
  • MGI:3645497 (score: 0.063)

From Inparanoid:20070104

Oryza gramene

  • Q653V4 (score: 1.000; bootstrap: 100%)
  • Q653V7 (score: 0.858)
  • Q9LLY2 (score: 0.710)
  • Q43763 (score: 0.663)
  • Q9LGC6 (score: 0.402)
  • Q69LM5 (score: 0.085)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000006488 (score: 1.000; bootstrap: 92%)
  • ENSPTRP00000011903 (score: 0.424)
  • ENSPTRP00000043548 (score: 0.084)
  • ENSPTRP00000033889 (score: 0.058)
  • ENSPTRP00000026830 (score: 0.057)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000011369 (score: 1.000; bootstrap: 88%)
  • ENSRNOP00000026794 (score: 0.443)
  • ENSRNOP00000042711 (score: 0.080)
  • ENSRNOP00000041882 (score: 0.063)
  • ENSRNOP00000047023 (score: 0.051)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YBR229C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAPB24D30c (score: 1.000; bootstrap: 100%)
  • SPAC10391c (score: 0.597)
  • SPAC30D111c (score: 0.528)
  • SPAC10023c (score: 0.060)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000158280 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000141996 (score: 0.372)
  • NEWSINFRUP00000165456 (score: 0.095)
  • NEWSINFRUP00000139505 (score: 0.072)
  • NEWSINFRUP00000144476 (score: 0.052)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00027778001 (score: 1.000; bootstrap: 100%)
  • GSTENP00015697001 (score: 0.132)
  • GSTENP00033404001 (score: 0.123)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000012288 (score: 1.000; bootstrap: 85%)
  • ENSXETP00000000603 (score: 0.485)
  • ENSXETP00000002742 (score: 0.097)
  • ENSXETP00000002502 (score: 0.080)

From Inparanoid:20070104

Shigella flexneri

YICI

From SHIGELLACYC

E. coli O157

YICI

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01055 Glycosyl hydrolases family 31

Superfamily (EcoliWiki Page)

SUPERFAMILY:51011

Superfamily (EcoliWiki Page)

SUPERFAMILY:51445

Panther (EcoliWiki Page)

PTHR22762:SF32

Superfamily (EcoliWiki Page)

SUPERFAMILY:74650

Superfamily (EcoliWiki Page)

SUPERFAMILY:117125

EcoCyc

EcoCyc:EG11685

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11685

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001628

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1636

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011951

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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