gadA:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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From Inparanoid:20070104  
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="F46ac038fbac07"  class=" tableEdit Gene_accessions_table" 
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11999:SF1 PTHR11999:SF1]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53383 SUPERFAMILY:53383]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00282 PFAM:PF00282]
[http://pfam.janelia.org/family/PF00282 PF00282 Pyridoxal-dependent decarboxylase conserved domain]
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[[EcoCyc]]
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EcoCyc:EG50009
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG50009
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120002568
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB4302
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0011490
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
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===Categories===
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Latest revision as of 08:36, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000012191 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G02010 (score: 0.635)
  • AT3G17760 (score: 1.000; bootstrap: 100%)
  • AT5G17330 (score: 0.603)
  • AT2G02000 (score: 0.593)
  • AT1G65960 (score: 0.260)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000013166 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038467 (score: 1.000; bootstrap: 100%)
  • WBGene00031909 (score: 0.294)
  • WBGene00042089 (score: 0.092)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00004981 (score: 0.298)
  • WBGene00006418 (score: 1.000; bootstrap: 100%)
  • WBGene00022427 (score: 0.231)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000020786 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000002369 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000011354 (score: 0.173)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231446 (score: 1.000; bootstrap: 100%)
  • DDB0231439 (score: 0.516)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0010591 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21426-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000007235 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000299297 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000012828 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000010934 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1261415 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q8LLP2 (score: 0.980)
  • Q6ASV4 (score: 1.000; bootstrap: 100%)
  • Q84U04 (score: 0.773)
  • Q6YSB2 (score: 0.684)
  • Q7XV14 (score: 0.668)
  • Q9AQU4 (score: 0.662)
  • Q7XZU7 (score: 0.603)
  • Q7XV18 (score: 0.542)
  • Q9AR41 (score: 0.540)
  • Q5F1L4 (score: 0.330)
  • Q5EXM3 (score: 0.160)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000004500 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000000686 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YMR250W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000131149 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00024535001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000017960 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

GADA

From SHIGELLACYC

E. coli O157

GADA

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR11999:SF1

Superfamily (EcoliWiki Page)

SUPERFAMILY:53383

Pfam (EcoliWiki Page)

PF00282 Pyridoxal-dependent decarboxylase conserved domain

EcoCyc

EcoCyc:EG50009

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG50009

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002568

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4302

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011490

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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