ygfF:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00106 PF00106  short chain dehydrogenase]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00106 PFAM:PF00106]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51735 SUPERFAMILY:51735]
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[[EcoCyc]]
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EcoCyc:G7514
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG12971
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120004076
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2798
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0009526
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
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__NOTOC__
__NOTOC__
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===Categories===
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Latest revision as of 08:35, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000024539 (score: 1.000; bootstrap: 84%)
  • ENSANGP00000021339 (score: 0.550)
  • ENSANGP00000021120 (score: 0.378)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G03980 (score: 1.000; bootstrap: 96%)
  • AT3G04000 (score: 0.544)
  • AT5G18210 (score: 0.491)
  • AT4G13180 (score: 0.477)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00035307 (score: 1.000; bootstrap: 74%)
  • WBGene00035308 (score: 1.000; bootstrap: 53%)
  • WBGene00028617 (score: 0.174)
  • WBGene00028618 (score: 0.163)
  • WBGene00033128 (score: 0.153)
  • WBGene00033127 (score: 0.150)
  • WBGene00028619 (score: 0.142)
  • WBGene00033126 (score: 0.130)
  • WBGene00031245 (score: 0.116)
  • WBGene00041131 (score: 0.108)
  • WBGene00028621 (score: 0.100)
  • WBGene00028504 (score: 0.097)
  • WBGene00033125 (score: 0.097)
  • WBGene00039097 (score: 0.097)
  • WBGene00041130 (score: 0.095)
  • WBGene00028648 (score: 0.092)
  • WBGene00040923 (score: 0.089)
  • WBGene00031232 (score: 0.087)
  • WBGene00042377 (score: 0.087)
  • WBGene00033122 (score: 0.082)
  • WBGene00031193 (score: 0.079)
  • WBGene00040924 (score: 0.071)
  • WBGene00033120 (score: 0.071)
  • WBGene00033123 (score: 0.068)
  • WBGene00028201 (score: 0.062)
  • WBGene00028200 (score: 0.054)

From Inparanoid:20070104

Shigella flexneri

YGFF

From SHIGELLACYC

E. coli O157

Z4865

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00106 short chain dehydrogenase

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

EcoCyc

EcoCyc:G7514

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12971

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004076

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2798

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009526

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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