paoC:Evolution: Difference between revisions

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{{Tab|Quickview|paoC}}{{Tab|Gene|paoC}}{{Tab|Gene Product(s)|paoC}}{{Tab|Expression|paoC}}{{Tab On|Evolution|paoC}}{{Tab|On One Page|paoC}}{{TabsBottom}}
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{|class = 'sortable' {{Prettytable}} id='207413'
{|  id="W46ab9dda7c7af"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Mus musculus''   
''Mus musculus''   
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From Inparanoid:20070104  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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From Inparanoid:20070104  
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF02738 PF02738  Molybdopterin-binding domain of aldehyde dehydrogenase]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01315 PF01315  Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11908:SF4 PTHR11908:SF4]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01315 PFAM:PF01315]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=54665 SUPERFAMILY:54665]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=56003 SUPERFAMILY:56003]
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[[EcoCyc]]
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EcoCyc:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
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__NOTOC__
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===Categories===
===Categories===
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Latest revision as of 08:30, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Monodelphis domestica

  • ENSMODP00000019349 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000015626 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000015675 (score: 0.597)
  • ENSMODP00000018747 (score: 0.586)
  • ENSMODP00000015728 (score: 0.532)

From Inparanoid:20070104

Mus musculus

  • MGI:98973 (score: 1.000; bootstrap: 100%)
  • MGI:3529596 (score: 1.000; bootstrap: 100%)
  • MGI:1918974 (score: 0.645)
  • MGI:1919122 (score: 0.625)
  • MGI:88035 (score: 0.594)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000009634 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000042328 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000049807 (score: 0.594)
  • ENSRNOP00000021389 (score: 0.557)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00031889001 (score: 1.000; bootstrap: 100%)
  • GSTENP00012569001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

E. coli O157

YAGR

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase

Pfam (EcoliWiki Page)

PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain

Panther (EcoliWiki Page)

PTHR11908:SF4

Superfamily (EcoliWiki Page)

SUPERFAMILY:54665

Superfamily (EcoliWiki Page)

SUPERFAMILY:56003

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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