cueO:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00394 PF00394  Multicopper oxidase]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=49503 SUPERFAMILY:49503]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=49503 SUPERFAMILY:49503]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF07732 PFAM:PF07732]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=49503 SUPERFAMILY:49503]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF07731 PF07731  Multicopper oxidase]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF07732 PF07732  Multicopper oxidase]
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[[EcoCyc]]
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EcoCyc:EG12318
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG12318
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120002194
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2223
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0000430
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
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===Categories===
===Categories===
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Latest revision as of 08:29, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000000035 (score: 1.000; bootstrap: 68%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000008010 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000006188 (score: 0.259)
  • ENSAPMP00000021510 (score: 0.225)
  • ENSAPMP00000008011 (score: 0.179)
  • ENSAPMP00000028827 (score: 0.138)
  • ENSAPMP00000016897 (score: 0.108)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G71040 (score: 1.000; bootstrap: 70%)
  • AT1G23010 (score: 0.781)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000002481 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000018618 (score: 0.249)
  • ENSCINP00000018617 (score: 0.186)
  • ENSCINP00000006845 (score: 0.169)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0039387 (score: 1.000; bootstrap: 100%)
  • FBgn0052557 (score: 0.274)
  • FBgn0032116 (score: 0.175)
  • FBgn0050437 (score: 0.091)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19259-PA (score: 1.000; bootstrap: 100%)
  • GA16988-PA (score: 0.258)
  • GA17667-PA (score: 0.192)
  • GA15844-PA (score: 0.141)

From Inparanoid:20070104

Mus musculus

  • MGI:1332240 (score: 1.000; bootstrap: 100%)
  • MGI:88476 (score: 0.423)
  • MGI:2685355 (score: 0.399)
  • MGI:88383 (score: 0.267)
  • MGI:88382 (score: 0.246)

From Inparanoid:20070104

Oryza gramene

  • Q7F757 (score: 1.000; bootstrap: 64%)
  • Q5ZE01 (score: 0.972)
  • Q9AWU4 (score: 0.624)
  • Q5ZDZ9 (score: 0.575)
  • Q5ZE07 (score: 0.411)
  • Q5ZE00 (score: 0.354)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YMR058W (score: 1.000; bootstrap: 100%)
  • YFL041W (score: 0.406)
  • YDR506C (score: 0.095)

From Inparanoid:20070104

Shigella flexneri

YACK

From SHIGELLACYC

E. coli O157

YACK

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00394 Multicopper oxidase

Superfamily (EcoliWiki Page)

SUPERFAMILY:49503

Superfamily (EcoliWiki Page)

SUPERFAMILY:49503

Superfamily (EcoliWiki Page)

SUPERFAMILY:49503

Pfam (EcoliWiki Page)

PF07731 Multicopper oxidase

Pfam (EcoliWiki Page)

PF07732 Multicopper oxidase

EcoCyc

EcoCyc:EG12318

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12318

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002194

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2223

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000430

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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