smf:Quickview: Difference between revisions

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{|   id="Q49b025574ac44"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[smf:Gene|''smf]]'' (synonyms: ''ECK3272, b4473, JW5708, b3286 (obsolete), b3285 (obsolete), smf1, smf2'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''smf''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[smf:Gene_Product(s)|Smf product]]<ref name='LIB:Riley_2006'/>: conserved protein product, B4473 product
''ECK3272, b4473, JW5708, b3286 (obsolete), b3285 (obsolete), smf1, smf2''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Function unknown, possible role in DNA metabolism<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''conserved protein<ref name='LIB:Riley_2006'/>, B4473<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Smf<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3272, JW5708, b4473''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:smf-smg|smf-smg]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:smf-smg|smf-smg]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=smf&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11604]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001552&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=smf&loc=MG1655%3A3431582..3430458,W3110%3A4206856..4207980,REL606%3A3361465..3360341,DH10B%3A3529327..3528203,BW2952%3A3317615..3318739]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3317615&end=3318739&gene=smf&aa=mvdteiwlrlmsisslygddmvriahwvakqshidavvlqqtgltlrqaqrflsfprksiesslcwleqpnhhlipadsefyppqllattdypgalfvegelhalhsfqlavvgsrahswygerwgrlfcetlatrgvtitsglargidgvahkaalqvngvsiavlgnglntihprrharlaaslleqggalvsefpldvpplaynfprrnriisglskgvlvveaalrsgslvtarcaleqgrevfalpgpignpgsegphwlikqgailvtepeeilenlqfglhwlpdapensfyspdqqdvalpfpellanvgdevtpvdvvaeragqpvpevvtqllelelagwiaavpggyvrlrrachvrrtnvfv]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=smf+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=smf]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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Homologous to the H. influenzae DNA protecting protein DprA. Cloned Smf (E.c.) partially complements the transformation defect of a dprA (H.i.) mutant; a smf (E.c.) mutant had no transformation, Hfr-conjugation, recombination, or DNA repair defect (Smeets, 2006). Named smf because it is divergent to fms (def) gene. smf is predicted to have a CRP-S promoter co-regulated by both Crp and Sxy (Cameron, 2006).<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:46, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

smf

Gene Synonym(s)

ECK3272, b4473, JW5708, b3286 (obsolete), b3285 (obsolete), smf1, smf2[1][2]

Product Desc.

conserved protein[2][3]

Function unknown, possible role in DNA metabolism[4]

Product Synonyms(s)

conserved protein[1], B4473[2][1], Smf[2][1] , ECK3272, JW5708, b4473

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): smf-smg[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Homologous to the H. influenzae DNA protecting protein DprA. Cloned Smf (E.c.) partially complements the transformation defect of a dprA (H.i.) mutant; a smf (E.c.) mutant had no transformation, Hfr-conjugation, recombination, or DNA repair defect (Smeets, 2006). Named smf because it is divergent to fms (def) gene. smf is predicted to have a CRP-S promoter co-regulated by both Crp and Sxy (Cameron, 2006).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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