yghB:Quickview: Difference between revisions

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{|{{Prettytable}}
{|   id="Q49b030f2d747b"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[yghB:Gene|''yghB]]'' (synonyms: ''ECK3001, b3009, JW2976'')<ref name='LIB:Riley_2006'/>
''yghB''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[yghB:Gene_Product(s)|YghB product]]<ref name='LIB:Riley_2006'/>: conserved inner membrane protein product, B3009 product
''ECK3001, b3009, JW2976''<ref name='LIB:Riley_2006'/>, JW2976''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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conserved inner membrane protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
conserved inner membrane protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Required, with yqjA, for membrane integrity; predicted inner membrane protein, function unknown<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''conserved inner membrane protein<ref name='LIB:Riley_2006'/>, B3009<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YghB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3001, JW2976, b3009''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yghB|yghB]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yghB|yghB]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yghB&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11824]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001756&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yghB&loc=MG1655%3A3151585..3152244,W3110%3A3152219..3152878,DH10B%3A3249330..3249989,REL606%3A3087735..3088394,BW2952%3A3038733..3039392]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3038733&end=3039392&gene=yghB&aa=maviqdiiaalwqhdfaaladphivsvvyfvmfatlflengllpasflpgdsllilagaliaqgvmdflptiailtaaaslgcwlsyiqgrwlgntktvkgwlaqlpakyhqratcmfdrhgllallagrflafvrtllptmagisglpnrrfqffnwlsgllwvsvvtsfgyalsmipfvkrhedqvmtflmilpialltagllgtlfvvikkkycna]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yghB+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yghB]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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A yqjA yghB double mutant has a membrane defect causing a cell division defect at low temperatures and an osmoremedial growth defect at elevated temperatures (Thomkins, 2008). YqjA and YghB likely have redundant functions since overproduction of either complements the defect (Thomkins, 2008). DedA family. Induced by AI-2 pheromone.<ref name='LIB:EcoGene'/>




Latest revision as of 21:41, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yghB

Gene Synonym(s)

ECK3001, b3009, JW2976[1], JW2976

Product Desc.

conserved inner membrane protein[2][3]

Required, with yqjA, for membrane integrity; predicted inner membrane protein, function unknown[4]

Product Synonyms(s)

conserved inner membrane protein[1], B3009[2][1], YghB[2][1] , ECK3001, JW2976, b3009

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yghB[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


A yqjA yghB double mutant has a membrane defect causing a cell division defect at low temperatures and an osmoremedial growth defect at elevated temperatures (Thomkins, 2008). YqjA and YghB likely have redundant functions since overproduction of either complements the defect (Thomkins, 2008). DedA family. Induced by AI-2 pheromone.[4]



References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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