csdE:Quickview: Difference between revisions

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{|{{Prettytable}}
{|   id="M49aee26c8248b"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[csdE:Gene|''csdE]]'' (synonyms: ''ygdK, ECK2807, b2811, JW2782'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''csdE''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[csdE:Gene_Product(s)|YgdK product]]<ref name='LIB:Riley_2006'/>: predicted Fe-S metabolism protein product, B2811 product
''ygdK, ECK2807, b2811, JW2782''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, JW2782''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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CsdE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
CsdE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:cysteine sulfinate desulfinase|cysteine sulfinate desulfinase]]<ref name='LIB:EcoCyc11.1'/>
Component of [[:Category:Complex:cysteine sulfinate desulfinase|cysteine sulfinate desulfinase]]<ref name='LIB:EcoCyc11.1'/>


Binds and stimulates CsdA activity<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted Fe-S metabolism protein<ref name='LIB:Riley_2006'/>, B2811<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgdK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2807, JW2782, ygdK, b2811''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:csdA|csdA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:csdA|csdA]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=csdE&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7455]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004018&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=csdE&loc=MG1655%3A2942564..2943007,W3110%3A2943198..2943641,REL606%3A2839161..2839604,BW2952%3A2829712..2830155]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2829712&end=2830155&gene=csdE&aa=mtnpqfaghpfgttvtaetlrntfapltqwedkyrqlimlgkqlpalpdelkaqakeiagcenrvwlgytvaengkmhffgdsegrivrgllavlltavegktaaelqaqsplalfdelglraqlsasrsqglnalseaiiaatkqv]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=csdE+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=csdE]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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CdsE is homologous to SufE. csdAE are a multicopy suppressor of iscS.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:52, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

csdE

Gene Synonym(s)

ygdK, ECK2807, b2811, JW2782[1][2], JW2782

Product Desc.

CsdE[2][3];

Component of cysteine sulfinate desulfinase[3]

Binds and stimulates CsdA activity[4]

Product Synonyms(s)

predicted Fe-S metabolism protein[1], B2811[2][1], YgdK[2][1] , ECK2807, JW2782, ygdK, b2811

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): csdA[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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CdsE is homologous to SufE. csdAE are a multicopy suppressor of iscS.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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