raiA:Quickview: Difference between revisions

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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[raiA:Gene|''raiA]]'' (synonyms: ''yfiA, ECK2594, b2597, JW2578, urf1, pY'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/><ref name='LIB:EcoCyc10.6'/>
''raiA''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[raiA:Gene_Product(s)|YfiA product]]<ref name='LIB:Riley_2006'/>: cold shock protein associated with 30S ribosomal subunit product, B2597 product, Urf1 product, RaiA product, pY product
''yfiA, ECK2594, b2597, JW2578, urf1, pY''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/><ref name='LIB:EcoCyc10.6'/>
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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stationary phase translation inhibitor and ribosome stability factor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
stationary phase translation inhibitor and ribosome stability factor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Protein Y, associated with 30S ribosomal subunit; inhibits 70S dimer formation; stabilizes the ribosomal 70S complex against dissociation at low magnesium ion concentrations; counteracts miscoding under stress conditions <ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''cold shock protein associated with 30S ribosomal subunit<ref name='LIB:Riley_2006'/>, B2597<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfiA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Urf1<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RaiA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, pY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2594, JW2578, yfiA, b2597''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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Non-essential <ref name=PMID:17277072/>
Non-essential <ref name=PMID:17277072/>
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yfiA|yfiA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yfiA|yfiA]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=raiA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11151]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001134&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=raiA&loc=MG1655%3A2735176..2735517,W3110%3A2735810..2736151,BW2952%3A2620988..2621329]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2620988&end=2621329&gene=raiA&aa=mtmnitskqmeitpairqhvadrlaklekwqthlinphiilskepqgfvadatintpngvlvasgkhedmytainelinklerqlnklqhkgearraatsvkdanfveeveee]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=raiA+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=raiA]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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RaiA is a ribosome-associated factor that is induced in stationary phase. hpf paralog has opposite effect on 70S dimers.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:54, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

raiA

Gene Synonym(s)

yfiA, ECK2594, b2597, JW2578, urf1, pY[1][2][3]

Product Desc.

stationary phase translation inhibitor and ribosome stability factor[3][2]

Protein Y, associated with 30S ribosomal subunit; inhibits 70S dimer formation; stabilizes the ribosomal 70S complex against dissociation at low magnesium ion concentrations; counteracts miscoding under stress conditions [4]

Product Synonyms(s)

cold shock protein associated with 30S ribosomal subunit[1], B2597[3][1], YfiA[3][1], Urf1[3][1], RaiA[3][1], pY[3][1] , ECK2594, JW2578, yfiA, b2597

Function from GO

<GO_nr />

Knock-Out Phenotype

Non-essential [5]

Regulation/Expression

transcription unit(s): yfiA[3]

Regulation/Activity
Quick Links



        

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Notes

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RaiA is a ribosome-associated factor that is induced in stationary phase. hpf paralog has opposite effect on 70S dimers.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 3.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ Bubunenko, M et al. (2007) Essentiality of ribosomal and transcription antitermination proteins analyzed by systematic gene replacement in Escherichia coli. J. Bacteriol. 189 2844-53 PubMed
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