hcaD:Quickview: Difference between revisions

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{|   id="C49aee86665dbd"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[hcaD:Gene|''hcaD]]'' (synonyms: ''ECK2539, b2542, JW2526, hcaA4, yfhY, phdA'')<ref name='LIB:Riley_2006'/>
''hcaD''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[hcaD:Gene_Product(s)|HcaD product]]<ref name='LIB:Riley_2006'/>: phenylpropionate dioxygenase, ferredoxin reductase subunit product, B2542 product, YfhY product, PhdA product
''ECK2539, b2542, JW2526, hcaA4, yfhY, phdA''<ref name='LIB:Riley_2006'/>, phdA''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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HCAD-MONOMER<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
HCAD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:3-phenylpropionate dioxygenase system|3-phenylpropionate dioxygenase system]]<ref name='LIB:EcoCyc10.6'/>
Component of [[:Category:Complex:3-phenylpropionate dioxygenase system|3-phenylpropionate dioxygenase system]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


3-phenylpropionate/cinnamic acid dioxygenase, ferredoxin reductase subunit; hca genes catabolize 3-phenylpropionate and cinnamic acid, feeding the products into the the mhp pathway<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''phenylpropionate dioxygenase, ferredoxin reductase subunit<ref name='LIB:Riley_2006'/>, B2542<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfhY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PhdA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HcaD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2539, hcaA4, JW2526, phdA, yfhY, b2542''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:hcaEFCBD|hcaEFCBD]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:hcaEFCBD|hcaEFCBD]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=hcaD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7336]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003906&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=hcaD&loc=MG1655%3A2670069..2671271,W3110%3A2670703..2671905,DH10B%3A2761834..2763036,REL606%3A2592746..2593948,BW2952%3A2555874..2557076]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2555874&end=2557076&gene=hcaD&aa=mkektiiivgggqaaamaaaslrqqgftgelhlfsderhlpyerpplsksmlledspqlqqvlpanwwqennvhlhsgvtiktlgrdtrelvltngeswhwdqlfiatgaaarplplldalgercftlrhagdaarlrevlqpersvviigagtiglelaasatqrrckvtvielaatvmgrnapppvqryllqrhqqagvrillnnaiehvvdgekveltlqsgetlqadvviygigisaneqlareanldtangivideacrtcdpaifaggdvaitrldngalhrceswenannqaqiaaaamlglplpllpppwfwsdqysdnlqfigdmrgddwlcrgnpetqkaiwfnlqngvligavtlnqgreirpirkwiqsgktfdakllidenialksl]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hcaD+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=hcaD]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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Hydrocinnamic acid is a synonym for 3-phenylpropionic acid.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:49, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

hcaD

Gene Synonym(s)

ECK2539, b2542, JW2526, hcaA4, yfhY, phdA[1], phdA

Product Desc.

HCAD[2][3];

Component of 3-phenylpropionate dioxygenase system[2][3]

3-phenylpropionate/cinnamic acid dioxygenase, ferredoxin reductase subunit; hca genes catabolize 3-phenylpropionate and cinnamic acid, feeding the products into the the mhp pathway[4]

Product Synonyms(s)

phenylpropionate dioxygenase, ferredoxin reductase subunit[1], B2542[2][1], YfhY[2][1], PhdA[2][1], HcaD[2][1] , ECK2539, hcaA4, JW2526, phdA, yfhY, b2542

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): hcaEFCBD[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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Hydrocinnamic acid is a synonym for 3-phenylpropionic acid.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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