bdm:Quickview: Difference between revisions

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{|{{Prettytable}}
{|   id="B49aee1104b0b6"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[bdm:Gene|''bdm]]'' (synonyms: ''ECK1475, b1481, JW5239, yddX'')<ref name='LIB:Riley_2006'/>
''bdm''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[bdm:Gene_Product(s)|Bdm product]]<ref name='LIB:Riley_2006'/>: biofilm-dependent modulation protein product, YddX product, B1481 product, f92 product
''ECK1475, b1481, JW5239, yddX''<ref name='LIB:Riley_2006'/>, yddX''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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biofilm-dependent modulation protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
biofilm-dependent modulation protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Osmoresponsive gene with reduced expression in biofilms, function unknown<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''biofilm-dependent modulation protein<ref name='LIB:Riley_2006'/>, YddX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Bdm<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1481<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, f92<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1475, JW5239, yddX, b1481''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:bdm-sra|bdm-sra]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:bdm-sra|bdm-sra]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=bdm&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6776]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003365&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=bdm&loc=MG1655%3A1554304..1554089,W3110%3A1557994..1557779,DH10B%3A1644899..1644684,REL606%3A1530218..1530003,BW2952%3A1446148..1446363]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1446148&end=1446363&gene=bdm&aa=mcfinlrsvadtintqtrritmftyyqaenstaepalvnaieqglraqhgvvteddilmeltkwveasdndilsdiyqqtinyvvsgqhptl]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=bdm+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=bdm]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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The yddX gene is renamed bdm and the site of the MudX insertion is between the T and the G of the re-annotated ATG start codon, personal communication, Philippe Lejeune, INSA, France, Oct. 1999.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:52, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

bdm

Gene Synonym(s)

ECK1475, b1481, JW5239, yddX[1], yddX

Product Desc.

biofilm-dependent modulation protein[2][3]

Osmoresponsive gene with reduced expression in biofilms, function unknown[4]

Product Synonyms(s)

biofilm-dependent modulation protein[1], YddX[2][1], Bdm[2][1], B1481[2][1], f92[2][1] , ECK1475, JW5239, yddX, b1481

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): bdm-sra[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


The yddX gene is renamed bdm and the site of the MudX insertion is between the T and the G of the re-annotated ATG start codon, personal communication, Philippe Lejeune, INSA, France, Oct. 1999.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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