azoR:Quickview: Difference between revisions

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{|{{Prettytable}}
{|   id="K49aee0ea36cc3"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[azoR:Gene|''azoR]]'' (synonyms: ''ECK1405, b1412, JW1409, acpD'')<ref name='LIB:Riley_2006'/>
''azoR''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[azoR:Gene_Product(s)|AzoR product]]<ref name='LIB:Riley_2006'/>: NADH-azoreductase, FMN-dependent product, B1412 product, AcpD product
''ECK1405, b1412, JW1409, acpD''<ref name='LIB:Riley_2006'/>, acpD''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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NADH-azoreductase, FMN-dependent<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
NADH-azoreductase, FMN-dependent<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Azoreductase, NADH-dependent<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''NADH-azoreductase, FMN-dependent<ref name='LIB:Riley_2006'/>, B1412<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AzoR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, AcpD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , acpD, ECK1405, JW1409, b1412''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:azoR|azoR]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:azoR|azoR]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=azoR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6731]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003324&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=azoR&loc=MG1655%3A1480884..1480279,W3110%3A1484574..1483969,DH10B%3A1571479..1570874,BW2952%3A1372338..1372943]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1372338&end=1372943&gene=azoR&aa=mskvlvlkssilagysqsnqlsdyfveqwrekhsadeitvrdlaanpipvldgelvgalrpsdapltprqqealalsdeliaelkahdviviaapmynfnistqlknyfdlvaragvtfrytengpeglvtgkkaivitsrggihkdgptdlvtpylstflgfigitdvkfvfaegiaygpemaakaqsdakaaidsivsa]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=azoR+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=azoR]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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AzoR was identifed by N-terminal sequencing in an acyl carrier protein phosphodiesterase preparation and mistaken for the acpD gene. The real acpD gene has been identified (yajB) and renamed acpH. PDB 1TIK is mislabeled as a ACP phosphodiesterase.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:52, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

azoR

Gene Synonym(s)

ECK1405, b1412, JW1409, acpD[1], acpD

Product Desc.

NADH-azoreductase, FMN-dependent[2][3]

Azoreductase, NADH-dependent[4]

Product Synonyms(s)

NADH-azoreductase, FMN-dependent[1], B1412[2][1], AzoR[2][1], AcpD[2][1] , acpD, ECK1405, JW1409, b1412

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): azoR[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


AzoR was identifed by N-terminal sequencing in an acyl carrier protein phosphodiesterase preparation and mistaken for the acpD gene. The real acpD gene has been identified (yajB) and renamed acpH. PDB 1TIK is mislabeled as a ACP phosphodiesterase.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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