Qcontacts: Difference between revisions
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!align=left {{table heading style}} |Link/URL: | |||
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[http://tsailab.org/qcons/ Qcontacts] | |||
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!align=left {{table heading style}} |What: | |||
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Analysis of protein binding interfaces | |||
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!align=left {{table heading style}} |Who: | |||
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*Jerry Tsai | |||
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== Short Description == | == Short Description == | ||
[[Image:Qcons_home.jpg|right|thumb|300px|Home Page]] | |||
QContacts<ref name='PMID:16377205'/> allows for a fast and accurate analysis of protein binding interfaces. Given a PDB file to upload your own file (specifying PDB functionality under construction) and the interacting chains of interest, QContacts will provide a graphical representation of the residues in contact. The contact map will not only indicate the contacts present between the two proteins, but will also indicate whether the contact is a packing interaction, hydrogen bond, ion pair or salt bridge (hydrogen-bonded ion pair). Contact maps allow for easy visualization and comparison of protein-protein interactions. | QContacts<ref name='PMID:16377205'/> allows for a fast and accurate analysis of protein binding interfaces. Given a PDB file to upload your own file (specifying PDB functionality under construction) and the interacting chains of interest, QContacts will provide a graphical representation of the residues in contact. The contact map will not only indicate the contacts present between the two proteins, but will also indicate whether the contact is a packing interaction, hydrogen bond, ion pair or salt bridge (hydrogen-bonded ion pair). Contact maps allow for easy visualization and comparison of protein-protein interactions. | ||
Latest revision as of 21:50, 17 June 2010
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| Link/URL: | |
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| What: |
Analysis of protein binding interfaces |
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Short Description
QContacts[1] allows for a fast and accurate analysis of protein binding interfaces. Given a PDB file to upload your own file (specifying PDB functionality under construction) and the interacting chains of interest, QContacts will provide a graphical representation of the residues in contact. The contact map will not only indicate the contacts present between the two proteins, but will also indicate whether the contact is a packing interaction, hydrogen bond, ion pair or salt bridge (hydrogen-bonded ion pair). Contact maps allow for easy visualization and comparison of protein-protein interactions.
Links
Requirements
A single valid PDB containing the coords for both structures.
User notes
See Also
References
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