yagX:Quickview: Difference between revisions

Latest revision as of 21:44, 27 May 2013

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Quickview

Gene

Standard Name	yagX
Gene Synonym(s)	ECK0290, b0291, JW0285^[1], JW0285
Product Desc.	predicted aromatic compound dioxygenase^[2]^[3] Possible outer membrane protein, function unknown^[4]
Product Synonyms(s)	predicted aromatic compound dioxygenase^[1], B0291^[2]^[1], YagX^[2]^[1] , ECK0290, JW0285, b0291
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): yagV^[2]
Regulation/Activity
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Notes

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Contains PPE repeats. May be an usher protein.^[4]

References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoGene-4] 4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

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[2]

[3]

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+{|   id="K49b0296cbcc34"  class=" tableEdit New_Quickview_Table"
 |-
-!{{table_heading_style}} |Gene Name
+!align=left {{table_heading_style}} |Standard Name
-|
+||
-[[yagX:Gene|''yagX]]'' (synonyms: ''ECK0290, b0291, JW0285'')<ref name='LIB:Riley_2006'/>
+''yagX''
 |-
-!{{table_heading_style}} |Product(s)
+!align=left {{table_heading_style}} |Gene Synonym(s)
-|
+||
-[[yagX:Gene_Product(s)|YagX product]]<ref name='LIB:Riley_2006'/>: predicted aromatic compound dioxygenase<ref name='LIB:Riley_2006'/>, B0291<ref name='LIB:EcoCyc10.6'/>, YagX<ref name='LIB:EcoCyc10.6'/>
+''ECK0290, b0291, JW0285''<ref name='LIB:Riley_2006'/>, JW0285''
 |-
-!{{table_heading_style}} |Description
+!align=left {{table_heading_style}} |Product Desc.
-|
+||
 predicted aromatic compound dioxygenase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
+Possible outer membrane protein, function unknown<ref name='LIB:EcoGene'/>
+|-
+!align=left {{table_heading_style}} |Product Synonyms(s)
+||
+''predicted aromatic compound dioxygenase<ref name='LIB:Riley_2006'/>, B0291<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YagX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0290, JW0285, b0291''
+|-
+!align=left {{table_heading_style}} |Function from GO
+||
+<GO_nr />
 |-
-!{{table_heading_style}} |Knock-Out Phenotype
+!align=left {{table_heading_style}} |Knock-Out Phenotype
-|
+||
 |-
-!{{table_heading_style}} |Regulation/Expression
+!align=left {{table_heading_style}} |Regulation/Expression
-|
+||
-transcription unit(s): [[:Category:txn_units:yagV|yagV]]<ref name='LIB:EcoCyc10.6'/>
+transcription unit(s): [[:Category:Txn_unit:yagV|yagV]]<ref name='LIB:EcoCyc10.6'/>
 |-
-!{{table_heading_style}} |Regulation/Activity
+!align=left {{table_heading_style}} |Regulation/Activity
-|
+||
 |-
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+!align=left {{table_heading_style}} |Quick Links
+||
+[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yagX&s=search]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yagX&loc=MG1655%3A308556..306031,W3110%3A308556..306031,DH10B%3A284106..281581,REL606%3A279514..276989]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=279514&end=276989&gene=yagX&aa=mplrrfspglkaqfafgmvflfvqpdasaadisaqqiggviipqafsqalqdgmsvplyihlagsqgrqddqrigsafiwlddgqlrirkiqleesednasvseqtrqqlmalanapfnealtipltdnaqldlslrqlllqlvvkrealgtvlrsrsedigqssvntlssnlsynlgvynnqlrnggsntssylslnnvtalrehhvvldgslygigsgqqdselykamyerdfaghrfaggmldtwnlqslgpmtaisagkiyglswgnqasstifdssqsatpviaflpaagevhltrdgrllsvqnftmgnhevdtrglpygiydvevevivngrviskrtqrvnklfsrgrgvgaplawqvwggsfhmdrwsengkktrpakeswlagastsgslstlswaatgygydnqavgetrltlplggainvnlqnmlasdsswssigsisatlpggfsslwvnqektrignqlrrsdadnraiggtlnlnslwsklgtfsisynddrrynshyytadyyqnvysgtfgslglragiqrynngdsnantgkyialdlslplgnwfsagmthqngytmanlsarkqfdegtirtvganlsraisgdtgddktlsggayaqfdaryasgtlnvnsaadgyvntnltangsvgwqgkniaasgrtdgnagvifntgleddgqisakingrifplngkrnylplspygryevelqnsknsldsydivsgrksrltlypgnvaviepevkqmvtvsgriraedgtllanarinnhigrtrtdengefvmdvdkkyptidfrysgnktcevalelnqargavwvgdvvcsglsswaavtqtgeenes]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yagX+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yagX]]&nbsp;&nbsp;
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 <protect><!--Quickview_notes--></protect>
-==Notes==
+===Notes===
+{{BacktoTop}}
+Contains PPE repeats. May be an usher protein.<ref name='LIB:EcoGene'/>
 <noinclude>
 ==References==
+{{BacktoTop}}
 <references/>
 </noinclude>

yagX:Quickview: Difference between revisions

Latest revision as of 21:44, 27 May 2013

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