yjdL:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="N46ac16e5af990"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11654:SF6 PTHR11654:SF6]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=103473 SUPERFAMILY:103473]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF07690 PFAM:PF07690]
[http://pfam.janelia.org/family/PF00854 PF00854  POT family]
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[[EcoCyc]]
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EcoCyc:EG12469
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG12469
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120002307
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2362
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0013524
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
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Latest revision as of 08:37, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000000614 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000013980 (score: 0.953)
  • ENSANGP00000016126 (score: 0.478)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000006734 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G21670 (score: 1.000; bootstrap: 100%)
  • AT5G13400 (score: 1.000; bootstrap: 100%)
  • AT2G26690 (score: 0.427)
  • AT1G12110 (score: 0.406)
  • AT5G01180 (score: 0.296)
  • AT3G54140 (score: 0.293)
  • AT2G02040 (score: 0.281)
  • AT1G62200 (score: 0.274)
  • AT1G59740 (score: 0.265)
  • AT1G68570 (score: 0.262)
  • AT1G33440 (score: 0.252)
  • AT2G37900 (score: 0.251)
  • AT1G69850 (score: 0.249)
  • AT5G46050 (score: 0.249)
  • AT2G40460 (score: 0.249)
  • AT1G27040 (score: 0.248)
  • AT5G46040 (score: 0.242)
  • AT2G02020 (score: 0.239)
  • AT3G53960 (score: 0.239)
  • AT1G72140 (score: 0.226)
  • AT4G21680 (score: 0.224)
  • AT1G22570 (score: 0.222)
  • AT1G32450 (score: 0.220)
  • AT1G22550 (score: 0.218)
  • AT1G69870 (score: 0.217)
  • AT1G22540 (score: 0.212)
  • AT5G62730 (score: 0.206)
  • AT1G72120 (score: 0.204)
  • AT1G18880 (score: 0.203)
  • AT3G47960 (score: 0.202)
  • AT1G72130 (score: 0.201)
  • AT1G52190 (score: 0.198)
  • AT5G62680 (score: 0.197)
  • AT5G19640 (score: 0.195)
  • AT1G69860 (score: 0.182)
  • AT3G54450 (score: 0.182)
  • AT3G16180 (score: 0.178)
  • AT3G45710 (score: 0.173)
  • AT3G25260 (score: 0.170)
  • AT3G45680 (score: 0.169)
  • AT3G45650 (score: 0.157)
  • AT3G25280 (score: 0.156)
  • AT1G27080 (score: 0.150)
  • AT5G28470 (score: 0.148)
  • AT3G45720 (score: 0.148)
  • AT3G45700 (score: 0.146)
  • AT3G45660 (score: 0.144)
  • AT5G11570 (score: 0.142)
  • AT5G14940 (score: 0.126)
  • AT3G45690 (score: 0.121)
  • AT3G01350 (score: 0.114)
  • AT2G38100 (score: 0.061)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000001891 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000005822 (score: 0.371)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00037207 (score: 1.000; bootstrap: 100%)
  • WBGene00027616 (score: 0.345)
  • WBGene00039309 (score: 0.195)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00003876 (score: 1.000; bootstrap: 100%)
  • WBGene00003877 (score: 0.336)
  • WBGene00003878 (score: 0.194)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000017213 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000008446 (score: 0.372)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000000700 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000014855 (score: 0.254)
  • ENSCINP00000012499 (score: 0.245)
  • ENSCINP00000014896 (score: 0.190)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030131-4661 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-847 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0217021 (score: 1.000; bootstrap: 100%)
  • DDB0217039 (score: 1.000; bootstrap: 100%)
  • DDB0189610 (score: 0.345)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0028491 (score: 1.000; bootstrap: 100%)
  • FBgn0015565 (score: 1.000; bootstrap: 100%)
  • FBgn0037730 (score: 0.166)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA15513-PA (score: 1.000; bootstrap: 100%)
  • GA21790-PA (score: 0.070)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000027228 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000019052 (score: 0.316)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000295605 (score: 1.000; bootstrap: 100%)
  • ENSP00000349221 (score: 0.382)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000001876 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000001407 (score: 0.367)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000010391 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000022783 (score: 0.367)
  • ENSMODP00000022778 (score: 0.286)

From Inparanoid:20070104

Mus musculus

  • MGI:1890457 (score: 1.000; bootstrap: 100%)
  • MGI:1861376 (score: 0.359)

From Inparanoid:20070104

Oryza gramene

  • Q9FWL0 (score: 1.000; bootstrap: 100%)
  • Q7XDI7 (score: 1.000; bootstrap: 100%)
  • Q7XKA5 (score: 1.000; bootstrap: 100%)
  • Q6ZKX5 (score: 0.561)
  • Q9FWL4 (score: 0.549)
  • Q7XDJ1 (score: 0.549)
  • Q5N747 (score: 0.432)
  • Q7F2J8 (score: 0.425)
  • Q5N746 (score: 0.425)
  • Q6I5V4 (score: 0.423)
  • Q7F2J9 (score: 0.414)
  • Q8RU81 (score: 0.408)
  • Q5N741 (score: 0.370)
  • Q93VE2 (score: 0.366)
  • Q9FU86 (score: 0.361)
  • O48542 (score: 0.353)
  • Q8RV26 (score: 0.352)
  • Q5N742 (score: 0.351)
  • Q69LA3 (score: 0.346)
  • Q94GB5 (score: 0.345)
  • Q7XGT7 (score: 0.345)
  • Q7F2J7 (score: 0.341)
  • Q7F2J4 (score: 0.341)
  • Q5N734 (score: 0.341)
  • Q8RV33 (score: 0.333)
  • Q6I5V1 (score: 0.313)
  • Q852B2 (score: 0.308)
  • Q6ZJR2 (score: 0.300)
  • Q94LI2 (score: 0.298)
  • Q7G761 (score: 0.298)
  • Q9AV11 (score: 0.292)
  • Q94LJ1 (score: 0.292)
  • Q7XH99 (score: 0.292)
  • Q5Z8U7 (score: 0.286)
  • Q94LI9 (score: 0.284)
  • Q7XH97 (score: 0.284)
  • Q5Z8U6 (score: 0.284)
  • Q6E3L2 (score: 0.279)
  • Q6J6M9 (score: 0.277)
  • Q6ZGW7 (score: 0.277)
  • Q5Z6P7 (score: 0.277)
  • Q6EP35 (score: 0.277)
  • Q9SPU1 (score: 0.275)
  • Q8RZ75 (score: 0.274)
  • Q8S7X9 (score: 0.272)
  • Q7XHA8 (score: 0.272)
  • Q8S7Y1 (score: 0.270)
  • Q7XHB0 (score: 0.270)
  • Q6ZGY3 (score: 0.270)
  • Q6AU92 (score: 0.268)
  • Q8RZ74 (score: 0.265)
  • Q94LJ2 (score: 0.262)
  • Q7XHA0 (score: 0.262)
  • Q67VA7 (score: 0.262)
  • Q5N743 (score: 0.262)
  • Q94LI7 (score: 0.258)
  • Q7XH95 (score: 0.258)
  • Q6Z4I4 (score: 0.255)
  • Q5JLL0 (score: 0.255)
  • Q9FRP3 (score: 0.253)
  • Q7XBS8 (score: 0.253)
  • Q6Z8E5 (score: 0.253)
  • Q67VA9 (score: 0.252)
  • Q6AVV6 (score: 0.250)
  • Q7XUS7 (score: 0.247)
  • Q8S5S5 (score: 0.247)
  • Q7XZP7 (score: 0.243)
  • Q7XNU6 (score: 0.242)
  • Q5JNJ2 (score: 0.241)
  • Q9FRP0 (score: 0.240)
  • Q7XBS5 (score: 0.240)
  • Q53JI5 (score: 0.240)
  • Q5Z774 (score: 0.238)
  • Q7XNU8 (score: 0.237)
  • Q7XNU7 (score: 0.235)
  • Q53NB6 (score: 0.235)
  • Q5N745 (score: 0.234)
  • Q9FTZ3 (score: 0.231)
  • Q5VPM1 (score: 0.230)
  • Q94DR9 (score: 0.224)
  • Q7XUE5 (score: 0.222)
  • Q7FA05 (score: 0.219)
  • Q6YVW2 (score: 0.219)
  • Q5N7W6 (score: 0.213)
  • Q7X619 (score: 0.213)
  • Q94DS0 (score: 0.212)
  • Q6AU97 (score: 0.202)
  • Q5N733 (score: 0.202)
  • Q6Y391 (score: 0.201)
  • Q53NY1 (score: 0.195)
  • Q5N732 (score: 0.192)
  • Q7XQZ8 (score: 0.191)
  • Q75IF4 (score: 0.190)
  • Q7XRI7 (score: 0.186)
  • Q75IE8 (score: 0.180)
  • Q53L71 (score: 0.168)
  • Q5Z8U4 (score: 0.163)
  • Q5WMP3 (score: 0.156)
  • Q94DP0 (score: 0.154)
  • Q8LLN6 (score: 0.144)
  • Q5KQF1 (score: 0.140)
  • Q53K47 (score: 0.132)
  • Q7XRI9 (score: 0.092)
  • Q6AU93 (score: 0.063)
  • Q6I5V0 (score: 0.053)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000010183 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000026348 (score: 0.076)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000015890 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000003189 (score: 0.400)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YKR093W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC13A24c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000177634 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000171922 (score: 0.536)
  • NEWSINFRUP00000148982 (score: 0.389)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00026114001 (score: 1.000; bootstrap: 100%)
  • GSTENP00024851001 (score: 1.000; bootstrap: 100%)
  • GSTENP00002557001 (score: 1.000; bootstrap: 100%)
  • GSTENP00029206001 (score: 0.884)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000026267 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000050771 (score: 0.435)

From Inparanoid:20070104

E. coli O157

YJDL

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR11654:SF6

Superfamily (EcoliWiki Page)

SUPERFAMILY:103473

Pfam (EcoliWiki Page)

PF00854 POT family

EcoCyc

EcoCyc:EG12469

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12469

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002307

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2362

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013524

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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