ygjH:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Bos taurus''   
''Bos taurus''   
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01588 PF01588  Putative tRNA binding domain]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=50249 SUPERFAMILY:50249]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01588 PFAM:PF01588]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11586:SF1 PTHR11586:SF1]
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[[EcoCyc]]
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EcoCyc:G7597
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG12719
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120004151
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2578
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0010094
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
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===Categories===
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Latest revision as of 08:35, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000016933 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000029721 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000024051 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000005542 (score: 0.083)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000015449 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000016229 (score: 0.095)
  • ENSCAFP00000009470 (score: 0.069)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000010550 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030425-2 (score: 1.000; bootstrap: 68%)
  • ZDB-CDNA-040801-239 (score: 1.000; bootstrap: 70%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231298 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0033351 (score: 1.000; bootstrap: 100%)
  • FBgn0027080 (score: 0.141)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA20918-PA (score: 1.000; bootstrap: 100%)
  • GA18259-PA (score: 0.167)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000005633 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000017152 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000257116 (score: 1.000; bootstrap: 100%)
  • ENSP00000350699 (score: 0.091)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000020693 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000021725 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000025782 (score: 0.095)

From Inparanoid:20070104

Mus musculus

  • MGI:2147627 (score: 1.000; bootstrap: 100%)
  • MGI:102774 (score: 0.096)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000000858 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000044973 (score: 0.091)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000010674 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000015213 (score: 0.096)
  • ENSRNOP00000048326 (score: 0.057)
  • ENSRNOP00000051212 (score: 0.051)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YGL105W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC30C24 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000149747 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000168834 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00033458001 (score: 1.000; bootstrap: 100%)
  • GSTENP00017557001 (score: 0.167)
  • GSTENP00001508001 (score: 0.140)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000042971 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

E. coli O157

YGJH

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01588 Putative tRNA binding domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:50249

Panther (EcoliWiki Page)

PTHR11586:SF1

EcoCyc

EcoCyc:G7597

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12719

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004151

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2578

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010094

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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