ybhL:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
Edited by wikibot
touch
 
(11 intermediate revisions by 2 users not shown)
Line 25: Line 25:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|class = 'sortable' {{Prettytable}} id='208252'
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="O46abadef4404c"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
|-  
|
|
''Anopheles gambiae''   
''Anopheles gambiae''   
Line 40: Line 40:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Apis mellifera''   
''Apis mellifera''   
Line 47: Line 47:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
Line 58: Line 58:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Bos taurus''   
''Bos taurus''   
Line 66: Line 66:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
Line 76: Line 76:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
Line 83: Line 83:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Canis familiaris''   
''Canis familiaris''   
Line 94: Line 94:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Ciona intestinalis''   
''Ciona intestinalis''   
Line 101: Line 101:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Danio rerio''   
''Danio rerio''   
Line 118: Line 118:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Drosophila melanogaster''   
''Drosophila melanogaster''   
Line 125: Line 125:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Gallus gallus''   
''Gallus gallus''   
Line 133: Line 133:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Homo sapiens''   
''Homo sapiens''   
Line 143: Line 143:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Macaca mulatta''   
''Macaca mulatta''   
Line 153: Line 153:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Monodelphis domestica''   
''Monodelphis domestica''   
Line 163: Line 163:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Mus musculus''   
''Mus musculus''   
Line 174: Line 174:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Pan troglodytes''   
''Pan troglodytes''   
Line 182: Line 182:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Rattus norvegicus''   
''Rattus norvegicus''   
Line 193: Line 193:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
Line 200: Line 200:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Takifugu rubripes''   
''Takifugu rubripes''   
Line 213: Line 213:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
Line 225: Line 225:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Shigella flexneri''   
''Shigella flexneri''   
Line 232: Line 232:
|
|
From SHIGELLACYC  
From SHIGELLACYC  
|-
|-  
|
|
''E. coli'' O157  
''E. coli'' O157  
Line 239: Line 239:
|
|
From ECOO157CYC  
From ECOO157CYC  
|-class='sortbottom'
 
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45537.O46abadef4404c&page=45537&pagename={{FULLPAGENAMEE}} edit table] || ||
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45537.O46abadef4404c&page=45537&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.45537.O46abadef4404c-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.45537.O46abadef4404c-->
{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
Line 260: Line 261:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' {{Prettytable}} id='208253'
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="H46abae0f1de3b"  class=" tableEdit Gene_accessions_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF01027 PF01027  Uncharacterised protein family UPF0005]
|
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01027 PFAM:PF01027]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23291:SF6 PTHR23291:SF6]
|
|
   
   
|-class='sortbottom'
|-
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45537.H46abae0f1de3b&page=45537&pagename={{FULLPAGENAMEE}} edit table] || ||
|
[[EcoCyc]]
|
EcoCyc:G6403
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG13668
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120003003
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB3432
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0002685
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45537.H46abae0f1de3b&page=45537&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.45537.H46abae0f1de3b-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.45537.H46abae0f1de3b-->
{{Evolution_families_table_help}}
 
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
Line 288: Line 332:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='109533'
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Y46a7fba18d408"  class=" tableEdit Links_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Name!!URL!!Comments
!|Name!!URL!!Comments
|-class='sortbottom'
 
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45537.Y46a7fba18d408&page=45537&pagename={{FULLPAGENAMEE}} edit table] || ||
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45537.Y46a7fba18d408&page=45537&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.45537.Y46a7fba18d408-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.45537.Y46a7fba18d408-->
{{Links_help}}
 


==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:31, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000027407 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000025350 (score: 0.433)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000004984 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G15470 (score: 1.000; bootstrap: 100%)
  • AT1G03070 (score: 0.446)
  • AT3G63310 (score: 0.430)
  • AT4G02690 (score: 0.421)
  • AT4G14730 (score: 0.400)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000008243 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000000405 (score: 0.118)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038589 (score: 1.000; bootstrap: 100%)
  • WBGene00035792 (score: 0.472)
  • WBGene00038588 (score: 0.374)
  • WBGene00027502 (score: 0.230)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00019664 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000000526 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000002091 (score: 0.093)
  • ENSCAFP00000002899 (score: 0.077)
  • ENSCAFP00000021584 (score: 0.059)
  • ENSCAFP00000012315 (score: 0.059)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014392 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-2152 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3099 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050320-88 (score: 0.144)
  • ZDB-GENE-050320-88 (score: 0.144)
  • ZDB-CDNA-040425-2301 (score: 0.136)
  • ZDB-GENE-040426-1367 (score: 0.136)
  • ZDB-CDNA-041010-69 (score: 0.118)
  • ZDB-GENE-041010-69 (score: 0.118)
  • ZDB-GENE-041010-18 (score: 0.100)
  • ZDB-CDNA-050522-465 (score: 0.092)
  • ZDB-GENE-050522-465 (score: 0.092)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0050379 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000016042 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000016657 (score: 0.075)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000286424 (score: 1.000; bootstrap: 100%)
  • ENSP00000314380 (score: 0.081)
  • ENSP00000258412 (score: 0.064)
  • ENSP00000321951 (score: 0.059)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000021857 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000000606 (score: 0.079)
  • ENSMMUP00000030179 (score: 0.068)
  • ENSMMUP00000030044 (score: 0.057)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000011352 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000013045 (score: 0.164)
  • ENSMODP00000005294 (score: 0.113)
  • ENSMODP00000019347 (score: 0.063)

From Inparanoid:20070104

Mus musculus

  • MGI:1915462 (score: 1.000; bootstrap: 100%)
  • MGI:1913418 (score: 0.138)
  • MGI:1922305 (score: 0.105)
  • MGI:1919643 (score: 0.100)
  • MGI:1916910 (score: 0.077)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000008813 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000042113 (score: 0.096)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000005694 (score: 1.000; bootstrap: 81%)
  • ENSRNOP00000045014 (score: 0.112)
  • ENSRNOP00000039775 (score: 0.094)
  • ENSRNOP00000011377 (score: 0.089)
  • ENSRNOP00000019848 (score: 0.066)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC5764 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000158755 (score: 1.000; bootstrap: 56%)
  • NEWSINFRUP00000134230 (score: 0.466)
  • NEWSINFRUP00000137810 (score: 0.457)
  • NEWSINFRUP00000163334 (score: 0.420)
  • NEWSINFRUP00000162561 (score: 0.403)
  • NEWSINFRUP00000145259 (score: 0.355)
  • NEWSINFRUP00000158446 (score: 0.184)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00028054001 (score: 1.000; bootstrap: 100%)
  • GSTENP00034101001 (score: 1.000; bootstrap: 100%)
  • GSTENP00027225001 (score: 0.518)
  • GSTENP00020761001 (score: 0.470)
  • GSTENP00015091001 (score: 0.456)
  • GSTENP00017408001 (score: 0.122)

From Inparanoid:20070104

Shigella flexneri

YBHL

From SHIGELLACYC

E. coli O157

YBHL

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01027 Uncharacterised protein family UPF0005

Panther (EcoliWiki Page)

PTHR23291:SF6

EcoCyc

EcoCyc:G6403

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13668

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003003

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3432

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002685

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=ybhL:Evolution&oldid=1389412"