ubiB:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF03109 PF03109  ABC1 family]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10566:SF10 PTHR10566:SF10]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF03109 PFAM:PF03109]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=56112 SUPERFAMILY:56112]
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[[EcoCyc]]
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EcoCyc:EG11476
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11476
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001437
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1443
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0012539
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
<references/>
<references />
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Latest revision as of 08:37, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000012457 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000009038 (score: 0.127)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000022834 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G71810 (score: 1.000; bootstrap: 90%)
  • AT1G79600 (score: 0.196)
  • AT3G24190 (score: 0.167)
  • AT5G24970 (score: 0.124)
  • AT4G31390 (score: 0.118)
  • AT2G39190 (score: 0.068)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000027295 (score: 1.000; bootstrap: 88%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00041642 (score: 1.000; bootstrap: 77%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00008410 (score: 1.000; bootstrap: 70%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000005861 (score: 1.000; bootstrap: 78%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0216427 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0035039 (score: 1.000; bootstrap: 100%)
  • FBgn0036142 (score: 0.163)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17555-PA (score: 1.000; bootstrap: 100%)
  • GA20483-PA (score: 0.131)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000020947 (score: 1.000; bootstrap: 87%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000072869 (score: 1.000; bootstrap: 84%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000020042 (score: 1.000; bootstrap: 82%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000017067 (score: 1.000; bootstrap: 85%)

From Inparanoid:20070104

Mus musculus

  • MGI:1889336 (score: 1.000; bootstrap: 79%)

From Inparanoid:20070104

Oryza gramene

  • Q69S79 (score: 1.000; bootstrap: 83%)
  • Q69S72 (score: 0.415)
  • Q6K2A4 (score: 0.260)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000035408 (score: 1.000; bootstrap: 93%)
  • ENSPTRP00000011191 (score: 0.164)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000013277 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YPL109C (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC21C33 (score: 1.000; bootstrap: 79%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000134017 (score: 1.000; bootstrap: 74%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00010642001 (score: 1.000; bootstrap: 63%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000044879 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

YIGR

From SHIGELLACYC

E. coli O157

YIGR

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF03109 ABC1 family

Panther (EcoliWiki Page)

PTHR10566:SF10

Superfamily (EcoliWiki Page)

SUPERFAMILY:56112

EcoCyc

EcoCyc:EG11476

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11476

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001437

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1443

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012539

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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