rsmH:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
Edited by wikibot
touch
 
(15 intermediate revisions by 2 users not shown)
Line 10: Line 10:
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
<noinclude>{{TabsTop}}
{{Tab|Quickview|mraW}}{{Tab|Gene|mraW}}{{Tab|Gene Product(s)|mraW}}{{Tab|Expression|mraW}}{{Tab On|Evolution|mraW}}{{Tab|On One Page|mraW}}{{TabsBottom}}
{{Tab|Quickview|rsmH}}{{Tab|Gene|rsmH}}{{Tab|Gene Product(s)|rsmH}}{{Tab|Expression|rsmH}}{{Tab On|Evolution|rsmH}}{{Tab|On One Page|rsmH}}{{TabsBottom}}
{|
{|
|-  
|-  
Line 25: Line 25:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|class = 'sortable' {{Prettytable}} id='207080'
{|  id="U46ab98537804b"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
|-  
|
|
''Anopheles gambiae''   
''Anopheles gambiae''   
Line 39: Line 39:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
Line 46: Line 46:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Bos taurus''   
''Bos taurus''   
Line 53: Line 53:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Canis familiaris''   
''Canis familiaris''   
Line 60: Line 60:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Ciona intestinalis''   
''Ciona intestinalis''   
Line 68: Line 68:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
Line 75: Line 75:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Drosophila melanogaster''   
''Drosophila melanogaster''   
Line 82: Line 82:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
Line 89: Line 89:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Gallus gallus''   
''Gallus gallus''   
Line 96: Line 96:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Homo sapiens''   
''Homo sapiens''   
Line 103: Line 103:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Macaca mulatta''   
''Macaca mulatta''   
Line 111: Line 111:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Monodelphis domestica''   
''Monodelphis domestica''   
Line 118: Line 118:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Mus musculus''   
''Mus musculus''   
Line 125: Line 125:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Oryza gramene''   
''Oryza gramene''   
Line 132: Line 132:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Pan troglodytes''   
''Pan troglodytes''   
Line 139: Line 139:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Rattus norvegicus''   
''Rattus norvegicus''   
Line 146: Line 146:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Takifugu rubripes''   
''Takifugu rubripes''   
Line 153: Line 153:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
Line 160: Line 160:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Xenopus tropicalis''   
''Xenopus tropicalis''   
Line 168: Line 168:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Shigella flexneri''   
''Shigella flexneri''   
Line 175: Line 175:
|
|
From SHIGELLACYC  
From SHIGELLACYC  
|-
|-  
|
|
''E. coli'' O157  
''E. coli'' O157  
Line 182: Line 182:
|
|
From ECOO157CYC  
From ECOO157CYC  
|-class='sortbottom'
 
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44153.U46ab98537804b&page=44153&pagename={{FULLPAGENAMEE}} edit table] || ||
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44153.U46ab98537804b&page=44153&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.44153.U46ab98537804b-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.44153.U46ab98537804b-->
{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
Line 203: Line 204:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' {{Prettytable}} id='207081'
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="T46ab9870a4a40"  class=" tableEdit Gene_accessions_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-  
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF01795 PF01795  MraW methylase family]
|
|-
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53335 SUPERFAMILY:53335]
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
|-
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01795 PFAM:PF01795]
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
|
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11265:SF0 PTHR11265:SF0]
|
|
   
   
|-class='sortbottom'
|-  
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44153.T46ab9870a4a40&page=44153&pagename={{FULLPAGENAMEE}} edit table] || ||
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=81799 SUPERFAMILY:81799]
|
|-
|
[[EcoCyc]]
|
EcoCyc:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44153.T46ab9870a4a40&page=44153&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.44153.T46ab9870a4a40-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.44153.T46ab9870a4a40-->
{{Evolution_families_table_help}}
 
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
Line 231: Line 289:
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' {{Prettytable}} id='107892'
{|   id="L46a7e8a3ec50b"  class=" tableEdit Links_table" 
|- {{table_heading_style}}
|- {{table_heading_style}}
!Name!!URL!!Comments
!|Name!!URL!!Comments
|-class='sortbottom'
 
|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44153.L46a7e8a3ec50b&page=44153&pagename={{FULLPAGENAMEE}} edit table] || ||
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.44153.L46a7e8a3ec50b&page=44153&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.44153.L46a7e8a3ec50b-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.44153.L46a7e8a3ec50b-->
{{Links_help}}
 


==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:29, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000016999 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G10910 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000004361 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000015073 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000001567 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000004862 (score: 0.128)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0185958 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0037822 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA13173-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000019820 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000307251 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000025702 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000017906 (score: 0.233)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000011843 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1924144 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Oryza gramene

  • Q6YXY1 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000006014 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000006670 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000132261 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00017869001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000009324 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000032587 (score: 0.387)

From Inparanoid:20070104

Shigella flexneri

YABC

From SHIGELLACYC

E. coli O157

YABC

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01795 MraW methylase family

Superfamily (EcoliWiki Page)

SUPERFAMILY:53335

Panther (EcoliWiki Page)

PTHR11265:SF0

Superfamily (EcoliWiki Page)

SUPERFAMILY:81799

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=rsmH:Evolution&oldid=1388877"