xanP:Evolution: Difference between revisions

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{{Tab|Quickview|yicE}}{{Tab|Gene|yicE}}{{Tab|Gene Product(s)|yicE}}{{Tab|Expression|yicE}}{{Tab On|Evolution|yicE}}{{Tab|On One Page|yicE}}{{TabsBottom}}
{{Tab|Quickview|xanP}}{{Tab|Gene|xanP}}{{Tab|Gene Product(s)|xanP}}{{Tab|Expression|xanP}}{{Tab On|Evolution|xanP}}{{Tab|On One Page|xanP}}{{TabsBottom}}
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{|class = 'sortable' {{Prettytable}} id='213187'
{|  id="T46ac079a2a274"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Homo sapiens''   
''Homo sapiens''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Macaca mulatta''   
''Macaca mulatta''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Mus musculus''   
''Mus musculus''   
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From Inparanoid:20070104  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
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''Pan troglodytes''   
''Pan troglodytes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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From Inparanoid:20070104  
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
From ECOO157CYC  
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_418111&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_418111&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00860 PFAM:PF00860]
[http://pfam.janelia.org/family/PF00860 PF00860 Permease family]
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[[EcoCyc]]
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EcoCyc:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
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===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:36, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT2G26510 (score: 1.000; bootstrap: 100%)
  • AT2G34190 (score: 0.491)
  • AT2G05760 (score: 0.473)
  • AT5G62890 (score: 0.409)
  • AT5G49990 (score: 0.403)
  • AT1G49960 (score: 0.395)
  • AT1G60030 (score: 0.393)
  • AT1G10540 (score: 0.384)
  • AT1G65550 (score: 0.357)
  • AT2G27810 (score: 0.208)
  • AT4G38050 (score: 0.190)
  • AT5G25420 (score: 0.183)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000012390 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000010823 (score: 0.518)
  • ENSBTAP00000016751 (score: 0.140)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00031101 (score: 1.000; bootstrap: 100%)
  • WBGene00039175 (score: 0.307)
  • WBGene00030168 (score: 0.291)
  • WBGene00030171 (score: 0.288)
  • WBGene00024937 (score: 0.277)
  • WBGene00030153 (score: 0.253)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00011595 (score: 1.000; bootstrap: 100%)
  • WBGene00011593 (score: 0.812)
  • WBGene00011596 (score: 0.492)
  • WBGene00020004 (score: 0.431)
  • WBGene00021994 (score: 0.308)
  • WBGene00008252 (score: 0.247)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0037807 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19493-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000344322 (score: 1.000; bootstrap: 100%)
  • ENSP00000302851 (score: 0.550)
  • ENSP00000295738 (score: 0.063)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000026307 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000001345 (score: 0.233)
  • ENSMMUP00000003100 (score: 0.089)
  • ENSMMUP00000001065 (score: 0.056)

From Inparanoid:20070104

Mus musculus

  • MGI:1859682 (score: 1.000; bootstrap: 100%)
  • MGI:1341903 (score: 0.562)
  • MGI:1917272 (score: 0.158)
  • MGI:104516 (score: 0.137)

From Inparanoid:20070104

Oryza gramene

  • Q6Z257 (score: 1.000; bootstrap: 100%)
  • Q6ZIE6 (score: 1.000; bootstrap: 100%)
  • Q6H5A2 (score: 0.874)
  • Q6Z7R7 (score: 0.827)
  • Q94DT2 (score: 0.808)
  • Q852B5 (score: 0.798)
  • Q41760 (score: 0.547)
  • Q851K4 (score: 0.529)
  • Q7XHQ9 (score: 0.081)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000022669 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000046760 (score: 0.267)
  • ENSPTRP00000022108 (score: 0.063)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000028885 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000027048 (score: 0.564)
  • ENSRNOP00000030381 (score: 0.157)
  • ENSRNOP00000024667 (score: 0.133)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC13991c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00016721001 (score: 1.000; bootstrap: 100%)
  • GSTENP00020272001 (score: 0.499)
  • GSTENP00025636001 (score: 0.436)
  • GSTENP00014656001 (score: 0.424)
  • GSTENP00030966001 (score: 0.263)

From Inparanoid:20070104

Shigella flexneri

YICE

From SHIGELLACYC

E. coli O157

YICE

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00860 Permease family

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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