yqiK:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Homo sapiens''   
''Homo sapiens''   
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''Mus musculus''   
''Mus musculus''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417523&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417523&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01145 PF01145  SPFH domain / Band 7 family]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13806:SF2 PTHR13806:SF2]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01145 PFAM:PF01145]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=117892 SUPERFAMILY:117892]
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[[EcoCyc]]
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EcoCyc:G7589
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG14232
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120004145
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3983
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0010013
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:35, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000015278 (score: 1.000; bootstrap: 62%)
  • ENSANGP00000014414 (score: 0.517)
  • ENSANGP00000009431 (score: 0.394)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000023511 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000032638 (score: 0.372)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G25250 (score: 1.000; bootstrap: 54%)
  • AT5G25260 (score: 0.930)
  • AT5G64870 (score: 0.856)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000013135 (score: 1.000; bootstrap: 73%)
  • ENSBTAP00000013288 (score: 0.323)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000000650 (score: 1.000; bootstrap: 72%)
  • ENSCAFP00000027777 (score: 0.413)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000017998 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-020430-3 (score: 1.000; bootstrap: 60%)
  • ZDB-CDNA-040425-2302 (score: 0.893)
  • ZDB-GENE-040426-1368 (score: 0.893)
  • ZDB-CDNA-040425-2982 (score: 0.568)
  • ZDB-GENE-020430-2 (score: 0.404)
  • ZDB-GENE-000210-36 (score: 0.391)
  • ZDB-CDNA-040425-302 (score: 0.232)
  • ZDB-GENE-020430-1 (score: 0.163)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0024753 (score: 1.000; bootstrap: 100%)
  • FBgn0024754 (score: 0.377)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA20892-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000259846 (score: 1.000; bootstrap: 100%)
  • ENSP00000333941 (score: 0.376)

From Inparanoid:20070104

Mus musculus

  • MGI:1100500 (score: 1.000; bootstrap: 71%)
  • MGI:103309 (score: 0.379)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000030607 (score: 1.000; bootstrap: 68%)
  • ENSPTRP00000015258 (score: 0.376)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000151851 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000146180 (score: 0.385)
  • NEWSINFRUP00000162434 (score: 0.366)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00016228001 (score: 1.000; bootstrap: 67%)
  • GSTENP00012253001 (score: 0.865)
  • GSTENP00015301001 (score: 0.393)
  • GSTENP00033728001 (score: 0.295)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000015050 (score: 1.000; bootstrap: 77%)
  • ENSXETP00000047879 (score: 0.281)
  • ENSXETP00000031383 (score: 0.227)
  • ENSXETP00000051960 (score: 0.130)

From Inparanoid:20070104

E. coli O157

Z4403

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01145 SPFH domain / Band 7 family

Panther (EcoliWiki Page)

PTHR13806:SF2

Superfamily (EcoliWiki Page)

SUPERFAMILY:117892

EcoCyc

EcoCyc:G7589

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14232

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004145

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3983

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010013

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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