cysN:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="O46abe73fc3b6d"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
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''Pan troglodytes''   
''Pan troglodytes''   
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From Inparanoid:20070104  
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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From Inparanoid:20070104  
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417231&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417231&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF03144 PF03144  Elongation factor Tu domain 2]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00009 PF00009  Elongation factor Tu GTP binding domain]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=50447 SUPERFAMILY:50447]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00009 PFAM:PF00009]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=50465 SUPERFAMILY:50465]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23115:SF34 PTHR23115:SF34]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52540 SUPERFAMILY:52540]
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[[EcoCyc]]
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EcoCyc:EG10194
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10194
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000189
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0191
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0009026
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
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{{BacktoTop}}

Latest revision as of 08:35, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000002945 (score: 1.000; bootstrap: 99%)
  • ENSANGP00000001942 (score: 0.136)
  • ENSANGP00000010498 (score: 0.114)
  • ENSANGP00000018372 (score: 0.113)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000025992 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000006614 (score: 0.195)
  • ENSAPMP00000010108 (score: 0.137)
  • ENSAPMP00000015649 (score: 0.127)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G07940 (score: 1.000; bootstrap: 96%)
  • AT1G07920 (score: 1.000; bootstrap: 96%)
  • AT1G07930 (score: 1.000; bootstrap: 97%)
  • AT5G60390 (score: 1.000; bootstrap: 97%)
  • AT1G18070 (score: 0.171)
  • AT5G10630 (score: 0.151)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00033301 (score: 1.000; bootstrap: 98%)
  • WBGene00041521 (score: 0.116)
  • WBGene00036661 (score: 0.106)
  • WBGene00042645 (score: 0.106)
  • WBGene00036411 (score: 0.106)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00010622 (score: 1.000; bootstrap: 98%)
  • WBGene00001169 (score: 0.117)
  • WBGene00001168 (score: 0.117)
  • WBGene00010405 (score: 0.108)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000011612 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000015370 (score: 0.127)
  • ENSCINP00000015866 (score: 0.119)
  • ENSCINP00000010553 (score: 0.115)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040718-64 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040718-84 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1538 (score: 0.897)
  • ZDB-GENE-030131-8278 (score: 0.897)
  • ZDB-CDNA-050417-328 (score: 0.894)
  • ZDB-GENE-050417-327 (score: 0.894)
  • ZDB-CDNA-040425-263 (score: 0.886)
  • ZDB-GENE-050706-188 (score: 0.886)
  • ZDB-GENE-990415-52 (score: 0.881)
  • ZDB-CDNA-041212-75 (score: 0.796)
  • ZDB-GENE-041212-66 (score: 0.796)
  • ZDB-CDNA-040425-353 (score: 0.210)
  • ZDB-GENE-030131-4009 (score: 0.210)
  • ZDB-CDNA-040822-36 (score: 0.197)
  • ZDB-GENE-040822-36 (score: 0.197)
  • ZDB-CDNA-040425-1231 (score: 0.190)
  • ZDB-GENE-030131-2987 (score: 0.190)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0191135 (score: 1.000; bootstrap: 99%)
  • DDB0191134 (score: 1.000; bootstrap: 99%)
  • DDB0201566 (score: 0.212)
  • DDB0214990 (score: 0.160)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0042712 (score: 1.000; bootstrap: 98%)
  • FBgn0020443 (score: 0.137)
  • FBgn0000557 (score: 0.114)
  • FBgn0000556 (score: 0.110)

From Inparanoid:20070104

Oryza gramene

  • Q40034 (score: 1.000; bootstrap: 99%)
  • Q41803 (score: 1.000; bootstrap: 99%)
  • O50018 (score: 0.996)
  • Q8SAT2 (score: 0.986)
  • O50075 (score: 0.981)
  • P34824 (score: 0.979)
  • O49831 (score: 0.978)
  • O64937 (score: 0.978)
  • Q8SAT1 (score: 0.977)
  • Q9M7E5 (score: 0.973)
  • Q9M7E6 (score: 0.970)
  • Q9M7E0 (score: 0.966)
  • Q9FYV3 (score: 0.960)
  • Q9M7E3 (score: 0.959)
  • Q6LAA4 (score: 0.956)
  • Q03033 (score: 0.956)
  • Q9M7E1 (score: 0.947)
  • Q9M7E2 (score: 0.933)
  • Q9M7E4 (score: 0.921)
  • Q7XWV7 (score: 0.164)
  • Q5ZE81 (score: 0.150)
  • Q7X9K3 (score: 0.149)
  • Q7XKB2 (score: 0.149)
  • Q7X864 (score: 0.146)
  • Q6K3A6 (score: 0.091)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000013270 (score: 1.000; bootstrap: 89%)
  • ENSPTRP00000045593 (score: 0.153)
  • ENSPTRP00000023661 (score: 0.062)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YKR084C (score: 1.000; bootstrap: 100%)
  • YDR172W (score: 0.064)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC25B21 (score: 1.000; bootstrap: 100%)
  • SPCC7949c (score: 0.094)
  • SPAC23A10 (score: 0.094)
  • SPBC8395c (score: 0.094)
  • SPCC5844 (score: 0.091)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000037990 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

CYSN

From SHIGELLACYC

E. coli O157

CYSN

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF03144 Elongation factor Tu domain 2

Pfam (EcoliWiki Page)

PF00009 Elongation factor Tu GTP binding domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:50447

Superfamily (EcoliWiki Page)

SUPERFAMILY:50465

Panther (EcoliWiki Page)

PTHR23115:SF34

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

EcoCyc

EcoCyc:EG10194

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10194

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000189

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0191

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009026

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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