fadJ:Evolution: Difference between revisions

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{|class = 'sortable' {{Prettytable}} id='210987'
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="F46abda0b2bcf9"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
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''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Apis mellifera''   
''Apis mellifera''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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From Inparanoid:20070104  
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Gallus gallus''   
''Gallus gallus''   
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From Inparanoid:20070104  
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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From Inparanoid:20070104  
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Pan troglodytes''   
''Pan troglodytes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Takifugu rubripes''   
''Takifugu rubripes''   
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From Inparanoid:20070104  
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
From ECOO157CYC  
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|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.48655.F46abda0b2bcf9&page=48655&pagename={{FULLPAGENAMEE}} edit table] || ||
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416843&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_416843&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G46abda337dac2"  class=" tableEdit Gene_accessions_table" 
|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF02737 PF02737  3-hydroxyacyl-CoA dehydrogenase, NAD binding domain]
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|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00725 PF00725  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain]
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|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00725 PF00725  3-hydroxyacyl-CoA dehydrogenase, C-terminal domain]
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|-  
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00378 PFAM:PF00378]
[http://pfam.janelia.org/family/PF00378 PF00378 Enoyl-CoA hydratase/isomerase family]
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|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.48655.G46abda337dac2&page=48655&pagename={{FULLPAGENAMEE}} edit table] || ||
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=48179 SUPERFAMILY:48179]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=48179 SUPERFAMILY:48179]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51735 SUPERFAMILY:51735]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52096 SUPERFAMILY:52096]
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[[EcoCyc]]
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EcoCyc:G7212
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG14127
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[RegulonDB]]
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RegulonDB:ECK120003787
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EchoBASE]]
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EchoBASE:EB3879
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[ASAP]]
|
ASAP:ABE-0007723
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
|- class="tableEdit_footer"
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{{Evolution_families_table_help}}
 
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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{{Links_help}}
 


==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:34, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000010297 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000018050 (score: 1.000; bootstrap: 79%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G29010 (score: 1.000; bootstrap: 100%)
  • AT3G06860 (score: 0.437)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000032860 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00033493 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00020347 (score: 1.000; bootstrap: 100%)
  • WBGene00001150 (score: 0.745)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000006377 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000012623 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-2581 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-040425-3528 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0028479 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18151-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000026633 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000288682 (score: 1.000; bootstrap: 99%)
  • ENSP00000339020 (score: 0.136)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000005853 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000021954 (score: 0.085)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000019733 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:2135593 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Oryza gramene

  • Q6K7T9 (score: 1.000; bootstrap: 100%)
  • Q8W1L6 (score: 0.981)
  • Q94CN1 (score: 0.465)
  • Q6L4L7 (score: 0.387)
  • Q5WMY4 (score: 0.356)
  • Q60E84 (score: 0.124)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000020159 (score: 1.000; bootstrap: 99%)
  • ENSPTRP00000007920 (score: 0.142)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000002410 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000143533 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00035720001 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000049725 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000015010 (score: 0.201)
  • ENSXETP00000009021 (score: 0.113)

From Inparanoid:20070104

Shigella flexneri

S2554

From SHIGELLACYC

E. coli O157

Z3604

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain

Pfam (EcoliWiki Page)

PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

Pfam (EcoliWiki Page)

PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

Pfam (EcoliWiki Page)

PF00378 Enoyl-CoA hydratase/isomerase family

Superfamily (EcoliWiki Page)

SUPERFAMILY:48179

Superfamily (EcoliWiki Page)

SUPERFAMILY:48179

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

Superfamily (EcoliWiki Page)

SUPERFAMILY:52096

EcoCyc

EcoCyc:G7212

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14127

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003787

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3879

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007723

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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