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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416813&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_416813&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00497 PF00497  Bacterial extracellular solute-binding proteins, family 3]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00497 PFAM:PF00497]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53850 SUPERFAMILY:53850]
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[[EcoCyc]]
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EcoCyc:EG10072
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10072
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000068
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0070
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0007621
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
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Latest revision as of 08:34, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000025173 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000024244 (score: 0.294)
  • ENSAPMP00000029857 (score: 0.231)
  • ENSAPMP00000016287 (score: 0.172)
  • ENSAPMP00000028248 (score: 0.160)
  • ENSAPMP00000034959 (score: 0.098)
  • ENSAPMP00000025563 (score: 0.087)
  • ENSAPMP00000013521 (score: 0.076)
  • ENSAPMP00000005337 (score: 0.073)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G17260 (score: 1.000; bootstrap: 100%)
  • AT1G42540 (score: 1.000; bootstrap: 100%)
  • AT4G35290 (score: 0.740)
  • AT3G51480 (score: 0.529)
  • AT1G05200 (score: 0.488)
  • AT2G32390 (score: 0.447)
  • AT2G32400 (score: 0.388)
  • AT2G29120 (score: 0.248)
  • AT2G29110 (score: 0.239)
  • AT2G24720 (score: 0.237)
  • AT2G29100 (score: 0.233)
  • AT2G24710 (score: 0.227)
  • AT5G11210 (score: 0.213)
  • AT5G27100 (score: 0.202)
  • AT4G31710 (score: 0.192)
  • AT5G11180 (score: 0.177)
  • AT3G07520 (score: 0.163)
  • AT5G48400 (score: 0.143)
  • AT5G48410 (score: 0.135)
  • AT3G04110 (score: 0.115)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000022788 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000024560 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000012214 (score: 0.428)
  • ENSBTAP00000026817 (score: 0.426)
  • ENSBTAP00000015567 (score: 0.402)
  • ENSBTAP00000032956 (score: 0.318)
  • ENSBTAP00000015717 (score: 0.218)
  • ENSBTAP00000006271 (score: 0.212)
  • ENSBTAP00000018244 (score: 0.177)
  • ENSBTAP00000000263 (score: 0.142)
  • ENSBTAP00000010376 (score: 0.126)
  • ENSBTAP00000015137 (score: 0.116)
  • ENSBTAP00000031756 (score: 0.113)
  • ENSBTAP00000035962 (score: 0.113)
  • ENSBTAP00000026819 (score: 0.111)
  • ENSBTAP00000035007 (score: 0.107)
  • ENSBTAP00000006272 (score: 0.050)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00033807 (score: 1.000; bootstrap: 82%)
  • WBGene00040593 (score: 0.222)
  • WBGene00037593 (score: 0.130)
  • WBGene00024756 (score: 0.124)
  • WBGene00036496 (score: 0.124)
  • WBGene00032152 (score: 0.116)
  • WBGene00025232 (score: 0.097)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00001615 (score: 1.000; bootstrap: 77%)
  • WBGene00001614 (score: 0.223)
  • WBGene00001612 (score: 0.133)
  • WBGene00001613 (score: 0.130)
  • WBGene00001616 (score: 0.122)
  • WBGene00001617 (score: 0.115)
  • WBGene00001618 (score: 0.100)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000026248 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000023480 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000012708 (score: 0.661)
  • ENSCAFP00000021888 (score: 0.660)
  • ENSCAFP00000027399 (score: 0.652)
  • ENSCAFP00000014728 (score: 0.530)
  • ENSCAFP00000005336 (score: 0.285)
  • ENSCAFP00000012922 (score: 0.270)
  • ENSCAFP00000004975 (score: 0.269)
  • ENSCAFP00000017493 (score: 0.230)
  • ENSCAFP00000007350 (score: 0.138)
  • ENSCAFP00000028837 (score: 0.075)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000017577 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000016353 (score: 0.146)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030616-53 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-040724-186 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-020125-5 (score: 0.896)
  • ZDB-GENE-030131-8013 (score: 0.705)
  • ZDB-GENE-020125-3 (score: 0.697)
  • ZDB-GENE-020125-4 (score: 0.673)
  • ZDB-GENE-040913-1 (score: 0.143)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0020429 (score: 1.000; bootstrap: 100%)
  • FBgn0038840 (score: 1.000; bootstrap: 100%)
  • FBgn0028422 (score: 1.000; bootstrap: 100%)
  • FBgn0051201 (score: 0.561)
  • FBgn0004620 (score: 0.386)
  • FBgn0038837 (score: 0.364)
  • FBgn0031293 (score: 0.319)
  • FBgn0039927 (score: 0.282)
  • FBgn0026255 (score: 0.233)
  • FBgn0028431 (score: 0.215)
  • FBgn0039916 (score: 0.189)
  • FBgn0004619 (score: 0.176)
  • FBgn0031634 (score: 0.079)
  • FBgn0010399 (score: 0.071)
  • FBgn0053513 (score: 0.050)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA15505-PA (score: 1.000; bootstrap: 100%)
  • GA13857-PA (score: 0.059)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000027694 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000013849 (score: 0.711)
  • ENSGALP00000015306 (score: 0.705)
  • ENSGALP00000006483 (score: 0.664)
  • ENSGALP00000024847 (score: 0.301)
  • ENSGALP00000025484 (score: 0.291)
  • ENSGALP00000003269 (score: 0.282)
  • ENSGALP00000010709 (score: 0.239)
  • ENSGALP00000002919 (score: 0.149)
  • ENSGALP00000016913 (score: 0.141)
  • ENSGALP00000001774 (score: 0.073)
  • ENSGALP00000014455 (score: 0.071)
  • ENSGALP00000019247 (score: 0.057)
  • ENSGALP00000011779 (score: 0.055)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000285900 (score: 1.000; bootstrap: 100%)
  • ENSP00000330148 (score: 1.000; bootstrap: 100%)
  • ENSP00000296526 (score: 0.666)
  • ENSP00000282499 (score: 0.656)
  • ENSP00000264357 (score: 0.644)
  • ENSP00000282020 (score: 0.561)
  • ENSP00000296893 (score: 0.307)
  • ENSP00000296212 (score: 0.298)
  • ENSP00000311646 (score: 0.298)
  • ENSP00000301218 (score: 0.249)
  • ENSP00000278723 (score: 0.249)
  • ENSP00000316696 (score: 0.090)
  • ENSP00000293190 (score: 0.061)
  • ENSP00000279593 (score: 0.057)
  • ENSP00000263269 (score: 0.053)
  • ENSP00000332549 (score: 0.051)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000012165 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000024019 (score: 0.674)
  • ENSMMUP00000011880 (score: 0.626)
  • ENSMMUP00000014398 (score: 0.553)
  • ENSMMUP00000006496 (score: 0.296)
  • ENSMMUP00000012661 (score: 0.293)
  • ENSMMUP00000012909 (score: 0.240)
  • ENSMMUP00000022947 (score: 0.205)
  • ENSMMUP00000029417 (score: 0.203)
  • ENSMMUP00000003163 (score: 0.144)
  • ENSMMUP00000031084 (score: 0.120)
  • ENSMMUP00000025129 (score: 0.057)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000011093 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000018436 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000018762 (score: 0.736)
  • ENSMODP00000002210 (score: 0.713)
  • ENSMODP00000022196 (score: 0.297)
  • ENSMODP00000026240 (score: 0.294)
  • ENSMODP00000016371 (score: 0.249)
  • ENSMODP00000024134 (score: 0.246)
  • ENSMODP00000022522 (score: 0.232)
  • ENSMODP00000013814 (score: 0.123)
  • ENSMODP00000024057 (score: 0.104)
  • ENSMODP00000021436 (score: 0.066)
  • ENSMODP00000022701 (score: 0.061)

From Inparanoid:20070104

Mus musculus

  • MGI:95808 (score: 1.000; bootstrap: 100%)
  • MGI:95812 (score: 1.000; bootstrap: 100%)
  • MGI:95809 (score: 0.661)
  • MGI:95811 (score: 0.650)
  • MGI:95810 (score: 0.638)
  • MGI:95813 (score: 0.558)
  • MGI:95815 (score: 0.310)
  • MGI:95816 (score: 0.297)
  • MGI:95818 (score: 0.249)
  • MGI:95817 (score: 0.248)
  • MGI:95814 (score: 0.243)
  • MGI:95819 (score: 0.089)
  • MGI:95822 (score: 0.066)
  • MGI:95821 (score: 0.059)
  • MGI:95823 (score: 0.053)
  • MGI:95820 (score: 0.053)

From Inparanoid:20070104

Oryza gramene

  • Q69L09 (score: 1.000; bootstrap: 100%)
  • Q653Y6 (score: 1.000; bootstrap: 100%)
  • Q8LH04 (score: 0.567)
  • Q6ZGL7 (score: 0.509)
  • Q69L15 (score: 0.505)
  • Q69L11 (score: 0.503)
  • Q69L07 (score: 0.501)
  • Q7XP59 (score: 0.501)
  • Q69L05 (score: 0.492)
  • Q5QLP6 (score: 0.360)
  • Q6K4P7 (score: 0.309)
  • Q69NA4 (score: 0.281)
  • Q69NA5 (score: 0.253)
  • Q69TK2 (score: 0.207)
  • Q5VMN1 (score: 0.195)
  • Q69KL0 (score: 0.145)
  • Q69TK3 (score: 0.121)
  • Q69KL2 (score: 0.098)
  • Q69TK5 (score: 0.095)
  • Q69KK7 (score: 0.092)
  • Q69KK9 (score: 0.059)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000029795 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000028409 (score: 0.666)
  • ENSPTRP00000007287 (score: 0.418)
  • ENSPTRP00000038299 (score: 0.312)
  • ENSPTRP00000031512 (score: 0.307)
  • ENSPTRP00000000961 (score: 0.162)
  • ENSPTRP00000004711 (score: 0.082)
  • ENSPTRP00000018971 (score: 0.076)
  • ENSPTRP00000027975 (score: 0.073)
  • ENSPTRP00000016345 (score: 0.063)
  • ENSPTRP00000008060 (score: 0.057)
  • ENSPTRP00000018965 (score: 0.053)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000051556 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000032971 (score: 0.725)
  • ENSRNOP00000009542 (score: 0.706)
  • ENSRNOP00000000415 (score: 0.297)
  • ENSRNOP00000040569 (score: 0.290)
  • ENSRNOP00000012065 (score: 0.279)
  • ENSRNOP00000027578 (score: 0.251)
  • ENSRNOP00000047794 (score: 0.241)
  • ENSRNOP00000008304 (score: 0.139)
  • ENSRNOP00000029227 (score: 0.070)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000132779 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000148659 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000150370 (score: 0.633)
  • NEWSINFRUP00000141976 (score: 0.612)
  • NEWSINFRUP00000130630 (score: 0.605)
  • NEWSINFRUP00000171567 (score: 0.605)
  • NEWSINFRUP00000172679 (score: 0.562)
  • NEWSINFRUP00000131012 (score: 0.525)
  • NEWSINFRUP00000161099 (score: 0.502)
  • NEWSINFRUP00000127449 (score: 0.252)
  • NEWSINFRUP00000161407 (score: 0.250)
  • NEWSINFRUP00000176766 (score: 0.248)
  • NEWSINFRUP00000178985 (score: 0.248)
  • NEWSINFRUP00000170962 (score: 0.215)
  • NEWSINFRUP00000148099 (score: 0.202)
  • NEWSINFRUP00000148098 (score: 0.196)
  • NEWSINFRUP00000169694 (score: 0.139)
  • NEWSINFRUP00000153442 (score: 0.139)
  • NEWSINFRUP00000127386 (score: 0.083)
  • NEWSINFRUP00000127414 (score: 0.075)
  • NEWSINFRUP00000166281 (score: 0.073)
  • NEWSINFRUP00000172202 (score: 0.072)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00011565001 (score: 1.000; bootstrap: 73%)
  • GSTENP00031562001 (score: 0.406)
  • GSTENP00032629001 (score: 0.213)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000040166 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

ARGT

From SHIGELLACYC

E. coli O157

ARGT

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00497 Bacterial extracellular solute-binding proteins, family 3

Superfamily (EcoliWiki Page)

SUPERFAMILY:53850

EcoCyc

EcoCyc:EG10072

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10072

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000068

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0070

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007621

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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