fadD:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="W46abcae550814"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
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''Apis mellifera''   
''Apis mellifera''   
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From Inparanoid:20070104  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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From Inparanoid:20070104  
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Takifugu rubripes''   
''Takifugu rubripes''   
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From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
From ECOO157CYC  
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416319&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_416319&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00501 PF00501  AMP-binding enzyme]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24096:SF44 PTHR24096:SF44]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00501 PFAM:PF00501]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=56801 SUPERFAMILY:56801]
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[[EcoCyc]]
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EcoCyc:EG11530
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11530
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001484
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1492
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0006005
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:33, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000010831 (score: 1.000; bootstrap: 98%)
  • ENSANGP00000028839 (score: 0.077)
  • ENSANGP00000003832 (score: 0.051)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000004528 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G21240 (score: 1.000; bootstrap: 75%)
  • AT1G51680 (score: 0.766)
  • AT3G21230 (score: 0.568)
  • AT1G65060 (score: 0.528)
  • AT4G05160 (score: 0.207)
  • AT1G62940 (score: 0.191)
  • AT5G63380 (score: 0.136)
  • AT1G20480 (score: 0.134)
  • AT1G20510 (score: 0.132)
  • AT4G19010 (score: 0.125)
  • AT5G38120 (score: 0.115)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000028385 (score: 1.000; bootstrap: 87%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038536 (score: 1.000; bootstrap: 70%)
  • WBGene00038969 (score: 0.162)
  • WBGene00038149 (score: 0.160)
  • WBGene00024202 (score: 0.070)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00008669 (score: 1.000; bootstrap: 74%)
  • WBGene00007082 (score: 0.150)
  • WBGene00022849 (score: 0.147)
  • WBGene00007228 (score: 0.051)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000025110 (score: 1.000; bootstrap: 85%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000018792 (score: 1.000; bootstrap: 91%)
  • ENSCINP00000013265 (score: 0.276)
  • ENSCINP00000013885 (score: 0.086)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040912-169 (score: 1.000; bootstrap: 92%)
  • ZDB-CDNA-040912-171 (score: 1.000; bootstrap: 93%)
  • ZDB-CDNA-050809-17 (score: 0.614)
  • ZDB-GENE-050809-115 (score: 0.614)
  • ZDB-CDNA-040801-96 (score: 0.576)
  • ZDB-GENE-040801-88 (score: 0.576)
  • ZDB-CDNA-040425-2499 (score: 0.133)
  • ZDB-GENE-040426-1565 (score: 0.133)
  • ZDB-GENE-030131-6493 (score: 0.122)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0186164 (score: 1.000; bootstrap: 89%)
  • DDB0231737 (score: 0.737)
  • DDB0231736 (score: 0.719)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0027601 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21474-PA (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Oryza gramene

  • Q6YUH6 (score: 1.000; bootstrap: 98%)
  • Q42982 (score: 0.967)
  • Q9M7S3 (score: 0.803)
  • Q6Q297 (score: 0.499)
  • Q9M7S2 (score: 0.498)
  • Q67W82 (score: 0.494)
  • Q6ETN3 (score: 0.491)
  • Q6ZAC1 (score: 0.486)
  • Q6ZKV9 (score: 0.467)
  • P17814 (score: 0.459)
  • Q9M7S1 (score: 0.459)
  • Q41288 (score: 0.292)
  • Q67W81 (score: 0.262)
  • Q7XXL2 (score: 0.159)
  • Q8LSQ3 (score: 0.122)
  • Q5N6Y8 (score: 0.118)
  • Q7F1X5 (score: 0.088)
  • Q6YYZ2 (score: 0.076)
  • Q9FRQ0 (score: 0.069)
  • Q7XBT5 (score: 0.069)
  • Q8RU95 (score: 0.068)
  • Q69RG7 (score: 0.059)
  • Q70CS8 (score: 0.052)
  • Q8GVF9 (score: 0.052)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000004673 (score: 1.000; bootstrap: 91%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000158363 (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000036644 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

FADD

From SHIGELLACYC

E. coli O157

FADD

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00501 AMP-binding enzyme

Panther (EcoliWiki Page)

PTHR24096:SF44

Superfamily (EcoliWiki Page)

SUPERFAMILY:56801

EcoCyc

EcoCyc:EG11530

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11530

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001484

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1492

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006005

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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