sodC:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="D46abc4bc0d834"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416163&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_416163&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=49329 SUPERFAMILY:49329]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10003:SF11 PTHR10003:SF11]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00080 PFAM:PF00080]
[http://pfam.janelia.org/family/PF00080 PF00080 Copper/zinc superoxide dismutase (SODC)]
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[[EcoCyc]]
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EcoCyc:G6886
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13419
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120003475
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3195
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0005505
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:32, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000015824 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000016164 (score: 0.390)
  • ENSANGP00000019828 (score: 0.059)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000014324 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G08830 (score: 1.000; bootstrap: 100%)
  • AT2G28190 (score: 0.586)
  • AT5G18100 (score: 0.539)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000005683 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000032384 (score: 0.181)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00031551 (score: 1.000; bootstrap: 100%)
  • WBGene00023778 (score: 0.300)
  • WBGene00032360 (score: 0.261)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00004933 (score: 1.000; bootstrap: 100%)
  • WBGene00004930 (score: 0.260)
  • WBGene00007036 (score: 0.260)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000013012 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000024271 (score: 0.178)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000009704 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-990415-258 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-868 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0191290 (score: 1.000; bootstrap: 100%)
  • DDB0188850 (score: 0.519)
  • DDB0232182 (score: 0.450)
  • DDB0205599 (score: 0.427)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0033631 (score: 1.000; bootstrap: 100%)
  • FBgn0003462 (score: 0.276)
  • FBgn0010531 (score: 0.161)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21488-PA (score: 1.000; bootstrap: 100%)
  • GA11202-PA (score: 0.268)
  • GA14646-PA (score: 0.171)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000025499 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000023211 (score: 0.173)
  • ENSGALP00000028682 (score: 0.165)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000307870 (score: 1.000; bootstrap: 100%)
  • ENSP00000270142 (score: 0.166)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000002283 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000003508 (score: 0.216)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000026310 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000010048 (score: 0.294)
  • ENSMODP00000000562 (score: 0.157)

From Inparanoid:20070104

Mus musculus

  • MGI:1333783 (score: 1.000; bootstrap: 100%)
  • MGI:98351 (score: 0.176)
  • MGI:3647296 (score: 0.174)

From Inparanoid:20070104

Oryza gramene

  • P93407 (score: 1.000; bootstrap: 100%)
  • Q6YYW6 (score: 1.000; bootstrap: 100%)
  • Q76MX3 (score: 1.000; bootstrap: 100%)
  • O24400 (score: 0.857)
  • Q93Y61 (score: 0.854)
  • Q96123 (score: 0.851)
  • P23345 (score: 0.449)
  • P23346 (score: 0.443)
  • Q4TUB3 (score: 0.434)
  • P28756 (score: 0.434)
  • P11428 (score: 0.431)
  • P28757 (score: 0.423)
  • P93801 (score: 0.423)
  • Q8LIB7 (score: 0.321)
  • P93800 (score: 0.309)
  • Q7M240 (score: 0.125)
  • Q5MJ23 (score: 0.111)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000006775 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000027474 (score: 0.060)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000026670 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000002885 (score: 0.171)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000140559 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000157268 (score: 0.312)
  • NEWSINFRUP00000149073 (score: 0.056)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00018898001 (score: 1.000; bootstrap: 100%)
  • GSTENP00013149001 (score: 0.241)
  • GSTENP00023251001 (score: 0.134)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000015993 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000024940 (score: 0.216)
  • ENSXETP00000004537 (score: 0.177)

From Inparanoid:20070104

Shigella flexneri

SODC

From SHIGELLACYC

E. coli O157

SODC

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:49329

Panther (EcoliWiki Page)

PTHR10003:SF11

Pfam (EcoliWiki Page)

PF00080 Copper/zinc superoxide dismutase (SODC)

EcoCyc

EcoCyc:G6886

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13419

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003475

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3195

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005505

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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