hdhA:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="S46abc368b5aae"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Apis mellifera''   
''Apis mellifera''   
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From Inparanoid:20070104  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Macaca mulatta''   
''Macaca mulatta''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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From Inparanoid:20070104  
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''Takifugu rubripes''   
''Takifugu rubripes''   
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From Inparanoid:20070104  
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
From ECOO157CYC  
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416136&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_416136&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00106 PF00106  short chain dehydrogenase]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00106 PFAM:PF00106]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51735 SUPERFAMILY:51735]
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[[EcoCyc]]
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EcoCyc:EG10425
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10425
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000418
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0420
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0005419
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
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{{BacktoTop}}

Latest revision as of 08:32, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000030681 (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G30670 (score: 1.000; bootstrap: 66%)
  • AT2G29330 (score: 0.751)
  • AT2G29320 (score: 0.733)
  • AT2G29340 (score: 0.725)
  • AT2G29310 (score: 0.723)
  • AT2G29300 (score: 0.720)
  • AT1G07440 (score: 0.596)
  • AT1G07450 (score: 0.557)
  • AT2G29360 (score: 0.536)
  • AT2G29290 (score: 0.531)
  • AT2G29350 (score: 0.523)
  • AT2G29150 (score: 0.495)
  • AT2G29370 (score: 0.490)
  • AT5G06060 (score: 0.482)
  • AT2G29260 (score: 0.461)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000019987 (score: 1.000; bootstrap: 75%)
  • ENSCINP00000010325 (score: 0.069)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000014296 (score: 1.000; bootstrap: 67%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000020810 (score: 1.000; bootstrap: 71%)
  • ENSMODP00000004520 (score: 1.000; bootstrap: 73%)
  • ENSMODP00000004616 (score: 0.429)
  • ENSMODP00000004553 (score: 0.422)
  • ENSMODP00000019429 (score: 0.057)
  • ENSMODP00000019424 (score: 0.052)

From Inparanoid:20070104

Oryza gramene

  • Q53KZ3 (score: 1.000; bootstrap: 56%)
  • Q53JM9 (score: 0.577)
  • Q84K74 (score: 0.394)
  • Q942W0 (score: 0.380)
  • Q942V9 (score: 0.378)
  • Q84Q70 (score: 0.362)
  • Q84JJ3 (score: 0.332)
  • Q7XL92 (score: 0.282)
  • Q53KL8 (score: 0.149)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000024782 (score: 1.000; bootstrap: 70%)
  • ENSRNOP00000024484 (score: 0.385)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC17398c (score: 1.000; bootstrap: 98%)
  • SPAC22A127c (score: 0.333)
  • SPAC8E110 (score: 0.185)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000137832 (score: 1.000; bootstrap: 78%)
  • NEWSINFRUP00000148738 (score: 0.126)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00005495001 (score: 1.000; bootstrap: 75%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000044336 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

E. coli O157

HDHA

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00106 short chain dehydrogenase

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

EcoCyc

EcoCyc:EG10425

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10425

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000418

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0420

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005419

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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