stfQ:Evolution: Difference between revisions

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{{Tab|Quickview|stfQ}}{{Tab|Gene|stfQ}}{{Tab|Gene Product(s)|stfQ}}{{Tab|Expression|stfQ}}{{Tab On|Evolution|stfQ}}{{Tab|On One Page|stfQ}}{{TabsBottom}}
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{|class = 'sortable' {{Prettytable}} id='209548'
{|  id="L46abc1a4797ef"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Gallus gallus''   
''Gallus gallus''   
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From Inparanoid:20070104  
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''Homo sapiens''   
''Homo sapiens''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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From Inparanoid:20070104  
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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From Inparanoid:20070104  
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416065&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_416065&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=88874 SUPERFAMILY:88874]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF03335 PF03335  Phage tail fibre repeat]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF03335 PF03335  Phage tail fibre repeat]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF03335 PF03335  Phage tail fibre repeat]
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|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF03335 PF03335  Phage tail fibre repeat]
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|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF03335 PF03335  Phage tail fibre repeat]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF07484 PFAM:PF07484]
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF03335 PF03335  Phage tail fibre repeat]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF03335 PF03335  Phage tail fibre repeat]
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|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF07484 PF07484  Phage Tail Collar Domain]
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[[EcoCyc]]
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EcoCyc:G6821
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13826
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120003410
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3587
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0005168
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
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===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:32, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Bos taurus

  • ENSBTAP00000038746 (score: 1.000; bootstrap: 51%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00027418 (score: 1.000; bootstrap: 100%)
  • WBGene00027434 (score: 0.138)
  • WBGene00027431 (score: 0.127)
  • WBGene00027401 (score: 0.082)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00019540 (score: 1.000; bootstrap: 76%)
  • WBGene00008707 (score: 0.087)
  • WBGene00022649 (score: 0.086)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000000690 (score: 1.000; bootstrap: 68%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000016155 (score: 1.000; bootstrap: 67%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0189911 (score: 1.000; bootstrap: 93%)
  • DDB0185120 (score: 0.186)
  • DDB0203095 (score: 0.073)
  • DDB0168484 (score: 0.062)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000031553 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000322544 (score: 1.000; bootstrap: 78%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000003259 (score: 1.000; bootstrap: 52%)

From Inparanoid:20070104

Oryza gramene

  • Q6KA29 (score: 1.000; bootstrap: 67%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR534C (score: 1.000; bootstrap: 95%)
  • YOR383C (score: 0.107)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBPJ46642 (score: 1.000; bootstrap: 61%)

From Inparanoid:20070104

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:88874

Pfam (EcoliWiki Page)

PF03335 Phage tail fibre repeat

Pfam (EcoliWiki Page)

PF03335 Phage tail fibre repeat

Pfam (EcoliWiki Page)

PF03335 Phage tail fibre repeat

Pfam (EcoliWiki Page)

PF03335 Phage tail fibre repeat

Pfam (EcoliWiki Page)

PF03335 Phage tail fibre repeat

Pfam (EcoliWiki Page)

PF03335 Phage tail fibre repeat

Pfam (EcoliWiki Page)

PF03335 Phage tail fibre repeat

Pfam (EcoliWiki Page)

PF07484 Phage Tail Collar Domain

EcoCyc

EcoCyc:G6821

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13826

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003410

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3587

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005168

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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