ydfG:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A46abc16c4d14d"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Mus musculus''   
''Mus musculus''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
From ECOO157CYC  
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416057&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_416057&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00106 PF00106  short chain dehydrogenase]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51735 SUPERFAMILY:51735]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
|
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00106 PFAM:PF00106]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24322:SF42 PTHR24322:SF42]
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[[EcoCyc]]
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EcoCyc:EG12345
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG12345
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120002220
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2249
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0005137
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:32, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000021773 (score: 1.000; bootstrap: 72%)
  • ENSANGP00000021713 (score: 0.558)
  • ENSANGP00000025535 (score: 0.526)
  • ENSANGP00000021685 (score: 0.476)
  • ENSANGP00000018841 (score: 0.267)
  • ENSANGP00000020359 (score: 0.185)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000000912 (score: 1.000; bootstrap: 81%)
  • ENSAPMP00000028618 (score: 0.722)
  • ENSAPMP00000011223 (score: 0.147)
  • ENSAPMP00000017885 (score: 0.131)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G10050 (score: 1.000; bootstrap: 63%)
  • AT5G65205 (score: 0.766)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000000096 (score: 1.000; bootstrap: 51%)
  • ENSBTAP00000024993 (score: 0.312)
  • ENSBTAP00000022431 (score: 0.231)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000026330 (score: 1.000; bootstrap: 81%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000011558 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040718-449 (score: 1.000; bootstrap: 70%)
  • ZDB-CDNA-040718-508 (score: 1.000; bootstrap: 68%)
  • ZDB-CDNA-040625-224 (score: 0.756)
  • ZDB-GENE-040625-155 (score: 0.756)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0214951 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0069973 (score: 1.000; bootstrap: 72%)
  • FBgn0069972 (score: 0.528)
  • FBgn0026268 (score: 0.425)
  • FBgn0030073 (score: 0.344)
  • FBgn0036380 (score: 0.320)
  • FBgn0030332 (score: 0.301)
  • FBgn0031775 (score: 0.263)
  • FBgn0038878 (score: 0.238)
  • FBgn0038946 (score: 0.138)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000008664 (score: 1.000; bootstrap: 84%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000354182 (score: 1.000; bootstrap: 64%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000000834 (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Mus musculus

  • MGI:2652816 (score: 1.000; bootstrap: 88%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000040511 (score: 1.000; bootstrap: 57%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000038582 (score: 1.000; bootstrap: 53%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YMR226C (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC5213 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000131205 (score: 1.000; bootstrap: 90%)
  • NEWSINFRUP00000136730 (score: 0.474)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00016280001 (score: 1.000; bootstrap: 83%)
  • GSTENP00030120001 (score: 0.255)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000004354 (score: 1.000; bootstrap: 70%)

From Inparanoid:20070104

Shigella flexneri

YDFG

From SHIGELLACYC

E. coli O157

YDFG

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00106 short chain dehydrogenase

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

Panther (EcoliWiki Page)

PTHR24322:SF42

EcoCyc

EcoCyc:EG12345

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12345

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002220

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2249

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005137

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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