Protein Data Bank (PDB): Difference between revisions
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[[Category:Databases]] | [[Category:Databases]] | ||
{|{{Prettytable}} width='30%' align = | [[Category:Protein Databases]] | ||
[[Category:Structure Databases]] | |||
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{| {{Prettytable}} width='30%' align="right" id="U46e0704c12bff" class=" tableEdit Database_table" | |||
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!align=left {{table heading style}} |Link/URL: | |||
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[http://www.rcsb.org/pdb/home/home.do PDB] | |||
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!align=left {{table heading style}} |What: | |||
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RCSB Protein Data Bank. | |||
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| | !align=left {{table heading style}} |Who: | ||
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Research Collaboratory for Structural Bioinformatics (RCSB) | |||
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| Updates | !align=left {{table heading style}} |Updates: | ||
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| Upcoming events | !align=left {{table heading style}} |Upcoming events: | ||
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| Web Services | !align=left {{table heading style}} |Web Services: | ||
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|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.1726.U46e0704c12bff&page=1726&pagename={{FULLPAGENAMEE}}&type=1&template=Database_table edit table]</span> || | |||
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=About {{PAGENAME}}= | <!--box uid=63ce1649aab8b3180235b0af7618f667.1726.U46e0704c12bff--></protect> | ||
The Protein Database ([http://http://www.rcsb.org/pdb/Welcome.do {{PAGENAME}}]) is the central repository for protein and nucleic acid structures. | ==About {{PAGENAME}}== | ||
The Protein Database ([http://http://www.rcsb.org/pdb/Welcome.do {{PAGENAME}}]) is the central repository for protein and nucleic acid structures. The PDB was founded based on discussions at Cold Spring Harbor Lab in 1971. The PDB was announced in 1971 in ''Nature New Biology''<ref>citation needed</ref>. It was first funded by NSF in 1975. | |||
In 2003, the PDB entered into a collaboration with other repositories to form the [http://www.wwpdb.org wwPDB]<ref name='PMID:17142228'/> | |||
==Content== | |||
[[Image:Pdb tour poster.jpg|frame|right|"Molecular Machinery: A Tour of the Protein Data Bank" by David S. Goodsell is available for download at the PDB website]] | |||
The PDB is the repository for structural data for macromolecules. A summary of the kinds of structures in the PDB can be viewed in the poster [http://www.rcsb.org/pdb/static.do?p=general_information/news_publications/newsletters/2004q1/poster_available.html "Molecular Machinery: A Tour of the Protein Data Bank"] by David S. Goodsell. Deposition of structure coordinate files in the PDB has been required by journals in order to publish a structure determination since the 1980s. Additional metadata requirements have been added since then. | |||
= | ==Using {{PAGENAME}}== | ||
=Using {{PAGENAME}}= | The PDB provides an [http://www.pdb.org/pdbstatic/tutorials/tutorial.html online tutorial] for how to use the resource | ||
==Browsing== | ===Browsing=== | ||
==Searching== | ===Searching=== | ||
==Usage examples== | ===Usage examples=== | ||
''Add links to additional pages describing success stories here.'' | ''Add links to additional pages describing success stories here.'' | ||
=Other sites with related content= | ==Other sites with related content== | ||
=Technology= | ==Technology== | ||
==Web Services/API== | ===Web Services/API=== | ||
=Discussion= | ==Discussion== | ||
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==References== | |||
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= | ==External Links== | ||
=External Links= | [http://www.pdb.org/pdb/home/home.do {{PAGENAME}}] URL: http://www.pdb.org/pdb/home/home.do | ||
[ | ===Discussion of {{PAGENAME}} on other websites=== | ||
==Discussion of {{PAGENAME}} on other websites== | * [http://biodatabase.org/index.php/Protein_Data_Bank on MetaBase] | ||
Latest revision as of 20:09, 24 August 2011
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| Link/URL: | |
|---|---|
| What: |
RCSB Protein Data Bank. |
| Who: |
Research Collaboratory for Structural Bioinformatics (RCSB) |
| Updates: | |
| Upcoming events: | |
| Web Services: |
|
| edit table |
About Protein Data Bank (PDB)
The Protein Database (Protein Data Bank (PDB)) is the central repository for protein and nucleic acid structures. The PDB was founded based on discussions at Cold Spring Harbor Lab in 1971. The PDB was announced in 1971 in Nature New Biology[1]. It was first funded by NSF in 1975.
In 2003, the PDB entered into a collaboration with other repositories to form the wwPDB[2]
Content
The PDB is the repository for structural data for macromolecules. A summary of the kinds of structures in the PDB can be viewed in the poster "Molecular Machinery: A Tour of the Protein Data Bank" by David S. Goodsell. Deposition of structure coordinate files in the PDB has been required by journals in order to publish a structure determination since the 1980s. Additional metadata requirements have been added since then.
Using Protein Data Bank (PDB)
The PDB provides an online tutorial for how to use the resource
Browsing
Searching
Usage examples
Add links to additional pages describing success stories here.
Technology
Web Services/API
Discussion
References
See Help:References for how to manage references in EcoliWiki.
External Links
Protein Data Bank (PDB) URL: http://www.pdb.org/pdb/home/home.do